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3GST
Asym. Unit
Info
Asym.Unit (90 KB)
Biol.Unit 1 (85 KB)
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(1)
Title
:
STRUCTURE OF THE XENOBIOTIC SUBSTRATE BINDING SITE OF A GLUTATHIONE S-TRANSFERASE AS REVEALED BY X-RAY CRYSTALLOGRAPHIC ANALYSIS OF PRODUCT COMPLEXES WITH THE DIASTEREOMERS OF 9-(S-GLUTATHIONYL)-10-HYDROXY-9, 10-DIHYDROPHENANTHRENE
Authors
:
X. Ji, H. L. Ammon, R. N. Armstrong, G. L. Gilliland
Date
:
07 Jun 93 (Deposition) - 31 Oct 93 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Glutathione Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Ji, W. W. Johnson, M. A. Sesay, L. Dickert, S. M. Prasad, H. L. Ammon, R. N. Armstrong, G. L. Gilliland
Structure And Function Of The Xenobiotic Substrate Binding Site Of A Glutathione S-Transferase As Revealed By X-Ray Crystallographic Analysis Of Product Complexes With The Diastereomers Of 9-(S-Glutathionyl)-10-Hydroxy-9, 10- Dihydrophenanthrene.
Biochemistry V. 33 1043 1994
(for further references see the
PDB file header
)
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Hetero Components
(2, 9)
Info
All Hetero Components
1a: (9R,10R)-9-(S-GLUTATHIONYL)-10-HYD... (GPRa)
1b: (9R,10R)-9-(S-GLUTATHIONYL)-10-HYD... (GPRb)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
View:
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No.
Name
Count
Type
Full Name
1
GPR
2
Ligand/Ion
(9R,10R)-9-(S-GLUTATHIONYL)-10-HYDROXY-9,10-DIHYDROPHENANTHRENE
2
SO4
7
Ligand/Ion
SULFATE ION
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:6 , TRP A:7 , LEU A:12 , TRP A:45 , LYS A:49 , ASN A:58 , LEU A:59 , PRO A:60 , GLN A:71 , SER A:72 , ASP B:105 , HOH A:224 , HOH A:234 , HOH A:235 , HOH B:242 , HOH A:279 , HOH A:317 , HOH A:319 , HOH A:349 , HOH A:369 , HOH A:386 , HOH A:393 , HOH A:438
BINDING SITE FOR RESIDUE GPR A 223
2
AC2
SOFTWARE
ASP A:105 , TYR B:6 , TRP B:7 , ARG B:42 , TRP B:45 , LYS B:49 , ASN B:58 , LEU B:59 , GLN B:71 , SER B:72 , ILE B:111 , HOH B:221 , HOH B:223 , HOH B:243 , HOH A:251 , HOH A:338 , HOH B:307 , HOH B:308 , HOH B:312 , HOH B:314 , HOH B:320
BINDING SITE FOR RESIDUE GPR B 220
3
AC3
SOFTWARE
ARG B:186
BINDING SITE FOR RESIDUE SO4 B 218
4
AC4
SOFTWARE
ARG A:201 , HOH A:249 , HOH A:310 , HOH A:459
BINDING SITE FOR RESIDUE SO4 A 218
5
AC5
SOFTWARE
ARG A:186 , HOH A:360
BINDING SITE FOR RESIDUE SO4 A 219
6
AC6
SOFTWARE
GLN A:109 , HOH A:338 , HOH A:389
BINDING SITE FOR RESIDUE SO4 A 220
7
AC7
SOFTWARE
LYS A:51 , HOH A:334 , HOH A:361
BINDING SITE FOR RESIDUE SO4 A 221
8
AC8
SOFTWARE
HOH A:288 , HOH A:297 , HOH A:319 , HOH A:428 , HOH A:463
BINDING SITE FOR RESIDUE SO4 A 222
9
AC9
SOFTWARE
ARG B:81 , CYS B:86 , HOH A:253 , HOH B:306 , HOH B:374
BINDING SITE FOR RESIDUE SO4 B 219
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: GST_CTER (A:89-207,B:89-207)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GST_CTER
PS50405
Soluble glutathione S-transferase C-terminal domain profile.
GSTM1_RAT
90-208
2
A:89-207
B:89-207
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d3gsta1 (A:85-217)
1b: SCOP_d3gstb1 (B:85-217)
2a: SCOP_d3gsta2 (A:1-84)
2b: SCOP_d3gstb2 (B:1-84)
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Protein Domains
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)
Organisms
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(
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Class
:
All alpha proteins
(14657)
Fold
:
GST C-terminal domain-like
(353)
Superfamily
:
GST C-terminal domain-like
(353)
Family
:
Glutathione S-transferase (GST), C-terminal domain
(263)
Protein domain
:
Class mu GST
(33)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(16)
1a
d3gsta1
A:85-217
1b
d3gstb1
B:85-217
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
Glutathione S-transferase (GST), N-terminal domain
(216)
Protein domain
:
Class mu GST
(33)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(16)
2a
d3gsta2
A:1-84
2b
d3gstb2
B:1-84
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_3gstA01 (A:1-85,A:191-217)
1b: CATH_3gstB01 (B:1-85,B:191-217)
2a: CATH_3gstA02 (A:86-190)
2b: CATH_3gstB02 (B:86-190)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
Black rat (Rattus rattus)
(10)
1a
3gstA01
A:1-85,A:191-217
1b
3gstB01
B:1-85,B:191-217
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2
(267)
Homologous Superfamily
:
[code=1.20.1050.10, no name defined]
(249)
Black rat (Rattus rattus)
(10)
2a
3gstA02
A:86-190
2b
3gstB02
B:86-190
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Pfam Domains
(0, 0)
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Asym.Unit (90 KB)
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