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3GSG
Biol. Unit 2
Info
Asym.Unit (138 KB)
Biol.Unit 1 (68 KB)
Biol.Unit 2 (68 KB)
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(1)
Title
:
AMPC BETA-LACTAMASE IN COMPLEX WITH FRAGMENT-BASED INHIBITOR
Authors
:
D. T. Teotico, B. K. Shoichet
Date
:
26 Mar 09 (Deposition) - 14 Apr 09 (Release) - 28 Jul 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Hydrolase, Antibiotic Resistance, Periplasm, Hydrolase/Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. G. Teotico, K. Babaoglu, G. J. Rocklin, R. S. Ferreira, A. M. Giannetti, B. K. Shoichet
Docking For Fragment Inhibitors Of Ampc Beta-Lactamase
Proc. Natl. Acad. Sci. Usa V. 106 7455 2009
(for further references see the
PDB file header
)
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Hetero Components
(3, 7)
Info
All Hetero Components
1a: DIMETHYL SULFOXIDE (DMSa)
1b: DIMETHYL SULFOXIDE (DMSb)
1c: DIMETHYL SULFOXIDE (DMSc)
1d: DIMETHYL SULFOXIDE (DMSd)
1e: DIMETHYL SULFOXIDE (DMSe)
1f: DIMETHYL SULFOXIDE (DMSf)
1g: DIMETHYL SULFOXIDE (DMSg)
2a: (2S)-2-[(3AR,4R,7S,7AS)-1,3-DIOXOO... (GF1a)
2b: (2S)-2-[(3AR,4R,7S,7AS)-1,3-DIOXOO... (GF1b)
2c: (2S)-2-[(3AR,4R,7S,7AS)-1,3-DIOXOO... (GF1c)
3a: PHOSPHATE ION (PO4a)
3b: PHOSPHATE ION (PO4b)
3c: PHOSPHATE ION (PO4c)
3d: PHOSPHATE ION (PO4d)
3e: PHOSPHATE ION (PO4e)
View:
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Label:
No.
Name
Count
Type
Full Name
1
DMS
5
Ligand/Ion
DIMETHYL SULFOXIDE
2
GF1
1
Ligand/Ion
(2S)-2-[(3AR,4R,7S,7AS)-1,3-DIOXOOCTAHYDRO-2H-4,7-METHANOISOINDOL-2-YL]PROPANOIC ACID
3
PO4
1
Ligand/Ion
PHOSPHATE ION
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Sites
(9, 9)
Info
All Sites
1: AC5 (SOFTWARE)
2: AC8 (SOFTWARE)
3: AC9 (SOFTWARE)
4: BC1 (SOFTWARE)
5: BC2 (SOFTWARE)
6: BC3 (SOFTWARE)
7: BC4 (SOFTWARE)
8: BC5 (SOFTWARE)
9: BC6 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC5
SOFTWARE
ALA A:307 , ARG A:309 , ALA B:79
BINDING SITE FOR RESIDUE DMS A 364
2
AC8
SOFTWARE
SER A:129 , ARG A:133 , HIS A:186 , HOH A:704 , HOH A:737 , HOH A:804 , LYS B:290
BINDING SITE FOR RESIDUE GF1 A 367
3
AC9
SOFTWARE
PHE A:41 , THR A:42 , GLY B:116 , TRP B:142 , LEU B:149
BINDING SITE FOR RESIDUE DMS B 1
4
BC1
SOFTWARE
TRP B:93 , LEU B:157 , LYS B:164
BINDING SITE FOR RESIDUE DMS B 362
5
BC2
SOFTWARE
TYR B:150 , ASN B:289 , ALA B:292 , LYS B:315 , THR B:316 , ASN B:346 , GF1 B:365 , HOH B:534
BINDING SITE FOR RESIDUE DMS B 363
6
BC3
SOFTWARE
HOH A:456 , ASP B:351 , TRP B:354 , GLN B:355
BINDING SITE FOR RESIDUE PO4 B 3
7
BC4
SOFTWARE
GLY A:263 , PRO A:297 , TYR B:45 , LYS B:51 , HOH B:716
BINDING SITE FOR RESIDUE DMS B 364
8
BC5
SOFTWARE
SER B:64 , GLN B:120 , ASN B:152 , TYR B:221 , ALA B:318 , DMS B:363 , HOH B:392 , HOH B:802
BINDING SITE FOR RESIDUE GF1 B 365
9
BC6
SOFTWARE
SER B:127 , SER B:128
BINDING SITE FOR RESIDUE DMS B 366
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: BETA_LACTAMASE_C (B:60-67)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BETA_LACTAMASE_C
PS00336
Beta-lactamase class-C active site.
AMPC_ECOLI
76-83
1
-
B:60-67
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3gsga_ (A:)
1b: SCOP_d3gsgb_ (B:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Multi-domain proteins (alpha and beta)
(2421)
Fold
:
beta-lactamase/transpeptidase-like
(515)
Superfamily
:
beta-lactamase/transpeptidase-like
(515)
Family
:
beta-Lactamase/D-ala carboxypeptidase
(411)
Protein domain
:
AMPC beta-Lactamase, class C
(85)
Escherichia coli, cephalosporinase [TaxId: 562]
(73)
1a
d3gsga_
A:
1b
d3gsgb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3gsgA00 (A:4-361)
1b: CATH_3gsgB00 (B:4-361)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Beta-lactamase
(339)
Homologous Superfamily
:
DD-peptidase/beta-lactamase superfamily
(335)
Escherichia coli. Organism_taxid: 83333. Strain: k12.
(12)
1a
3gsgA00
A:4-361
1b
3gsgB00
B:4-361
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Pfam Domains
(0, 0)
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Chain B
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (138 KB)
Header - Asym.Unit
Biol.Unit 1 (68 KB)
Header - Biol.Unit 1
Biol.Unit 2 (68 KB)
Header - Biol.Unit 2
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