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Asym. Unit
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Asym.Unit (139 KB)
Biol.Unit 1 (135 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF GLUTAMATE-1-SEMIALDEHYDE AMINOMUTASE IN COMPLEX WITH GABACULINE
Authors
:
M. Hennig, J. N. Jansonius
Date
:
26 Jun 98 (Deposition) - 17 Aug 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Chlorophyll Biosynthesis, Pyridoxal-5'-Phosphate, Pyridoxamine-5'-Phosphate, Asymmetric Dimer, Gabaculine, Isomerase
(Keyword Search:
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Reference
:
M. Hennig, B. Grimm, R. Contestabile, R. A. John, J. N. Jansonius
Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase: An Alpha2-Dimeric Vitamin B6-Dependent Enzyme With Asymmetry In Structure And Active Site Reactivity.
Proc. Natl. Acad. Sci. Usa V. 94 4866 1997
(for further references see the
PDB file header
)
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: 3-AMINOBENZOIC ACID (GABa)
2a: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOS... (PMPa)
2b: 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOS... (PMPb)
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No.
Name
Count
Type
Full Name
1
GAB
1
Ligand/Ion
3-AMINOBENZOIC ACID
2
PMP
2
Ligand/Ion
4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:122 , GLY A:123 , THR A:124 , TYR A:150 , ASN A:217 , ASP A:245 , VAL A:247 , MET A:248 , LYS A:273 , GAB A:500 , HOH A:2015 , HOH A:2110 , HOH A:2208 , THR B:305
BINDING SITE FOR RESIDUE PMP A 600
2
AC2
SOFTWARE
SER A:29 , VAL A:31 , ARG A:32 , TRP A:67 , SER A:163 , PMP A:600 , GLY B:94 , GLY B:304 , THR B:305 , HOH B:2336
BINDING SITE FOR RESIDUE GAB A 500
3
AC3
SOFTWARE
THR A:305 , SER B:122 , GLY B:123 , THR B:124 , TYR B:150 , GLY B:152 , ASN B:217 , ASP B:245 , MET B:248 , LYS B:273 , HOH B:2024 , HOH B:2101 , HOH B:2168
BINDING SITE FOR RESIDUE PMP B 601
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(1, 2)
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1: AA_TRANSFER_CLASS_3 (A:242-278,B:242-278)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
AA_TRANSFER_CLASS_3
PS00600
Aminotransferases class-III pyridoxal-phosphate attachment site.
GSA_SYNP6
242-278
2
A:242-278
B:242-278
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3gsba_ (A:)
1b: SCOP_d3gsbb_ (B:)
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PLP-dependent transferase-like
(627)
Superfamily
:
PLP-dependent transferases
(625)
Family
:
GABA-aminotransferase-like
(167)
Protein domain
:
Glutamate-1-semialdehyde aminomutase (aminotransferase)
(4)
Synechococcus sp., strain GR6 [TaxId: 1131]
(3)
1a
d3gsba_
A:
1b
d3gsbb_
B:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_3gsbA02 (A:77-325)
1b: CATH_3gsbB02 (B:77-325)
2a: CATH_3gsbA01 (A:7-76,A:326-433)
2b: CATH_3gsbB01 (B:7-76,B:326-433)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aspartate Aminotransferase; domain 2
(384)
Homologous Superfamily
:
Type I PLP-dependent aspartate aminotransferase-like (Major domain)
(384)
Synechococcus sp.. Organism_taxid: 1131. Strain: gr6.
(3)
1a
3gsbA02
A:77-325
1b
3gsbB02
B:77-325
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Aspartate Aminotransferase, domain 1
(355)
Homologous Superfamily
:
Aspartate Aminotransferase, domain 1
(354)
Synechococcus sp.. Organism_taxid: 1131. Strain: gr6.
(3)
2a
3gsbA01
A:7-76,A:326-433
2b
3gsbB01
B:7-76,B:326-433
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Pfam Domains
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Asym.Unit (139 KB)
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