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3GS2
Asym. Unit
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Asym.Unit (55 KB)
Biol.Unit 1 (50 KB)
Biol.Unit 2 (27 KB)
Biol.Unit 3 (25 KB)
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(1)
Title
:
RING1B C-TERMINAL DOMAIN/CBX7 CBOX COMPLEX
Authors
:
R. Wang, A. B. Taylor, C. A. Kim
Date
:
26 Mar 09 (Deposition) - 25 Aug 10 (Release) - 25 Aug 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: A,B (1x)
Biol. Unit 3: C,D (1x)
Keywords
:
Ring1B, Cbox, Cbx7, Polycomb, E3-Ligase, Chromosomal Protein, Transcription Regulation, Chromatin Regulator, Transcription Repressor, Ligase, Metal-Binding, Nucleus, Phosphoprotein, Repressor, Transcription, Ubl Conjugation Pathway, Zinc-Finger
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Wang, A. B. Taylor, B. Z. Leal, L. V. Chadwell, U. Ilangovan, A. K. Robinson, V. Schirf, P. J. Hart, E. M. Lafer, B. Demeler, A. P. Hinck, D. G. Mcewen, C. A. Kim
Polycomb Group Targeting Through Different Binding Partners Of Ring1B C-Terminal Domain.
Structure V. 18 966 2010
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
2a: ZINC ION (ZNa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
SO4
2
Ligand/Ion
SULFATE ION
2
ZN
1
Ligand/Ion
ZINC ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:54 , ARG A:266 , ARG A:273 , ARG C:273
BINDING SITE FOR RESIDUE SO4 A 1
2
AC2
SOFTWARE
ALA A:223 , HOH B:12 , HOH B:29 , HOH B:141 , ARG B:245 , ARG B:247
BINDING SITE FOR RESIDUE SO4 B 2
3
AC3
SOFTWARE
ALA A:223 , GLU A:312 , HOH B:29 , HOH B:141
BINDING SITE FOR RESIDUE ZN A 334
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(4, 8)
Info
All Exons
Exon 1.6b (B:219-248 | D:219-247)
Exon 2.6 (A:223-246 | C:224-246)
Exon 2.7b (A:246-303 (gaps) | C:246-303 (gaps...)
Exon 2.8b (A:304-333 | C:304-333)
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All Exon Boundaries
1: Boundary 1.5c/1.6b
2: Boundary 1.6b/-
3: Boundary 2.5/2.6
4: Boundary 2.6/2.7b
5: Boundary 2.7b/2.8b
6: Boundary 2.8b/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000216133
1b
ENSE00001934950
chr22:
39548655-39548381
275
CBX7_HUMAN
1-23
23
0
-
-
1.2a
ENST00000216133
2a
ENSE00000654689
chr22:
39545837-39545794
44
CBX7_HUMAN
24-38
15
0
-
-
1.3a
ENST00000216133
3a
ENSE00001330607
chr22:
39537441-39537376
66
CBX7_HUMAN
38-60
23
0
-
-
1.4
ENST00000216133
4
ENSE00001308314
chr22:
39534707-39534641
67
CBX7_HUMAN
60-82
23
0
-
-
1.5c
ENST00000216133
5c
ENSE00000654684
chr22:
39530757-39530406
352
CBX7_HUMAN
83-200
118
0
-
-
1.6b
ENST00000216133
6b
ENSE00001299764
chr22:
39530053-39526777
3277
CBX7_HUMAN
200-251
52
2
B:219-248
D:219-247
30
29
2.1a
ENST00000367510
1a
ENSE00001030490
chr1:
185014496-185014781
286
RING2_HUMAN
-
0
0
-
-
2.3
ENST00000367510
3
ENSE00002199249
chr1:
185056684-185056772
89
RING2_HUMAN
1-29
29
0
-
-
2.4a
ENST00000367510
4a
ENSE00000822928
chr1:
185060711-185060871
161
RING2_HUMAN
30-83
54
0
-
-
2.5
ENST00000367510
5
ENSE00000822929
chr1:
185062193-185062408
216
RING2_HUMAN
83-155
73
0
-
-
2.6
ENST00000367510
6
ENSE00000822930
chr1:
185067204-185067476
273
RING2_HUMAN
155-246
92
2
A:223-246
C:224-246
24
23
2.7b
ENST00000367510
7b
ENSE00000822931
chr1:
185068923-185069094
172
RING2_HUMAN
246-303
58
2
A:246-303 (gaps)
C:246-303 (gaps)
58
58
2.8b
ENST00000367510
8b
ENSE00001030494
chr1:
185069332-185071740
2409
RING2_HUMAN
304-336
33
2
A:304-333
C:304-333
30
30
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SCOP Domains
(0, 0)
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Pfam Domains
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Asym.Unit (55 KB)
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