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Getting 'Exon' information from database.
3GQY
Asym. Unit
Info
Asym.Unit (326 KB)
Biol.Unit 1 (318 KB)
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Title
:
ACTIVATOR-BOUND STRUCTURE OF HUMAN PYRUVATE KINASE M2
Authors
:
B. Hong, S. Dimov, W. Tempel, D. Auld, C. Thomas, M. Boxer, J. -K. Jianq, A. Skoumbourdis, S. Min, N. Southall, C. H. Arrowsmith, A. M. Edwards, C. Bountra, J. Weigelt, A. Bochkarev, J. Inglese, H. Park, Structural Genomics Consortium (Sgc)
Date
:
24 Mar 09 (Deposition) - 07 Apr 09 (Release) - 07 Apr 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Activator, Acetylation, Allosteric Enzyme, Alternative Splicing, Glycolysis, Kinase, Magnesium, Metal-Binding, Phosphoprotein, Polymorphism, Pyruvate, Transferase, Structural Genomics, Structural Genomics Consortium, Sgc
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Hong, S. Dimov, W. Tempel, D. Auld, C. Thomas, M. Boxer, J. -K. Jianq, A. Skoumbourdis, S. Min, N. Southall, C. H. Arrowsmith, A. M. Edwards, C. Bountra, J. Weigelt, A. Bochkarev, J. Inglese, H. Park
Activator-Bound Structures Of Human Pyruvate Kinase M2
To Be Published
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(4, 21)
Info
All Hetero Components
1a: 1-(2,3-DIHYDRO-1,4-BENZODIOXIN-6-Y... (DZGa)
1b: 1-(2,3-DIHYDRO-1,4-BENZODIOXIN-6-Y... (DZGb)
2a: BETA-FRUCTOSE-1,6-DIPHOSPHATE (FBPa)
2b: BETA-FRUCTOSE-1,6-DIPHOSPHATE (FBPb)
2c: BETA-FRUCTOSE-1,6-DIPHOSPHATE (FBPc)
2d: BETA-FRUCTOSE-1,6-DIPHOSPHATE (FBPd)
3a: L(+)-TARTARIC ACID (TLAa)
3b: L(+)-TARTARIC ACID (TLAb)
3c: L(+)-TARTARIC ACID (TLAc)
3d: L(+)-TARTARIC ACID (TLAd)
3e: L(+)-TARTARIC ACID (TLAe)
3f: L(+)-TARTARIC ACID (TLAf)
4a: UNKNOWN ATOM OR ION (UNXa)
4b: UNKNOWN ATOM OR ION (UNXb)
4c: UNKNOWN ATOM OR ION (UNXc)
4d: UNKNOWN ATOM OR ION (UNXd)
4e: UNKNOWN ATOM OR ION (UNXe)
4f: UNKNOWN ATOM OR ION (UNXf)
4g: UNKNOWN ATOM OR ION (UNXg)
4h: UNKNOWN ATOM OR ION (UNXh)
4i: UNKNOWN ATOM OR ION (UNXi)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DZG
2
Ligand/Ion
1-(2,3-DIHYDRO-1,4-BENZODIOXIN-6-YLSULFONYL)-4-[(4-METHOXYPHENYL)SULFONYL]PIPERAZINE
2
FBP
4
Ligand/Ion
BETA-FRUCTOSE-1,6-DIPHOSPHATE
3
TLA
6
Ligand/Ion
L(+)-TARTARIC ACID
4
UNX
9
Ligand/Ion
UNKNOWN ATOM OR ION
[
close Hetero Component info
]
Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE A:26 , LEU A:27 , MET A:30 , ASN A:318 , ASP A:354 , TYR A:390 , GLN A:393 , LEU A:394 , GLU A:397 , PHE B:26 , LEU B:27 , MET B:30 , ASN B:318 , LEU B:353 , ASP B:354 , TYR B:390 , GLN B:393 , LEU B:394 , GLU B:397 , HOH B:658 , HOH B:683
BINDING SITE FOR RESIDUE DZG B 540
02
AC2
SOFTWARE
THR A:432 , LYS A:433 , SER A:434 , SER A:437 , TRP A:482 , ARG A:489 , GLY A:514 , ARG A:516 , GLY A:518 , SER A:519 , GLY A:520 , PHE A:521 , THR A:522 , HOH A:580 , HOH A:664 , HOH A:677
BINDING SITE FOR RESIDUE FBP A 541
03
AC3
SOFTWARE
ARG A:73 , LYS A:270 , GLU A:272 , ALA A:293 , ARG A:294 , GLY A:295 , ASP A:296 , THR A:328 , HOH A:570 , HOH A:608
BINDING SITE FOR RESIDUE TLA A 542
04
AC4
SOFTWARE
LEU B:431 , THR B:432 , LYS B:433 , SER B:434 , ARG B:436 , SER B:437 , TRP B:482 , ARG B:489 , GLY B:514 , ARG B:516 , PRO B:517 , GLY B:518 , SER B:519 , GLY B:520 , PHE B:521 , THR B:522 , HOH B:571 , HOH B:583 , HOH B:592 , HOH B:594
BINDING SITE FOR RESIDUE FBP B 541
05
AC5
SOFTWARE
ARG B:73 , LYS B:270 , ALA B:293 , ARG B:294 , GLY B:295 , ASP B:296 , THR B:328 , HOH B:647
BINDING SITE FOR RESIDUE TLA B 542
06
AC6
SOFTWARE
GLY B:213 , ALA B:214 , ALA B:215 , HIS B:274 , GLU B:275 , ARG B:278 , HOH B:687
BINDING SITE FOR RESIDUE TLA B 543
07
AC7
SOFTWARE
PHE C:26 , LEU C:27 , ASN C:318 , ASP C:354 , TYR C:390 , GLN C:393 , GLU C:397 , HOH C:566 , HOH C:611 , HOH C:639 , PHE D:26 , LEU D:27 , ASN D:318 , LEU D:353 , ASP D:354 , TYR D:390 , GLN D:393 , LEU D:394 , GLU D:397
BINDING SITE FOR RESIDUE DZG C 540
08
AC8
SOFTWARE
THR C:432 , LYS C:433 , SER C:434 , ARG C:436 , SER C:437 , THR C:522
BINDING SITE FOR RESIDUE FBP C 541
09
AC9
SOFTWARE
ARG C:73 , LYS C:270 , GLU C:272 , ALA C:293 , ARG C:294 , GLY C:295 , ASP C:296 , THR C:328 , HOH C:657 , HOH C:697
BINDING SITE FOR RESIDUE TLA C 542
10
BC1
SOFTWARE
LEU D:431 , THR D:432 , LYS D:433 , SER D:434 , SER D:437 , TRP D:482 , ARG D:489 , GLY D:514 , ARG D:516 , PRO D:517 , GLY D:518 , SER D:519 , GLY D:520 , PHE D:521 , THR D:522 , HOH D:536 , HOH D:555 , HOH D:581 , HOH D:640
BINDING SITE FOR RESIDUE FBP D 541
11
BC2
SOFTWARE
ARG D:73 , LYS D:270 , ALA D:293 , ARG D:294 , GLY D:295 , ASP D:296 , THR D:328 , HOH D:670 , HOH D:697
BINDING SITE FOR RESIDUE TLA D 542
12
BC3
SOFTWARE
GLY D:213 , ALA D:214 , ALA D:215 , HIS D:274 , GLU D:275 , ARG D:278
BINDING SITE FOR RESIDUE TLA D 543
[
close Site info
]
SAPs(SNPs)/Variants
(1, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_033067 (G204V, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_033067
G
204
V
KPYM_HUMAN
Polymorphism
17853396
A/B/C/D
G
204
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: PYRUVATE_KINASE (A:265-277,B:265-277,C:265-277,D:26...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PYRUVATE_KINASE
PS00110
Pyruvate kinase active site signature.
KPYM_HUMAN
265-277
4
A:265-277
B:265-277
C:265-277
D:265-277
[
close PROSITE info
]
Exons
(10, 40)
Info
All Exons
Exon 1.3a (A:14-52 | B:14-52 | C:14-52 | D:14...)
Exon 1.4b (A:52-82 | B:52-82 | C:52-82 | D:52...)
Exon 1.5b (A:83-126 | B:83-125 | C:83-126 | D...)
Exon 1.6a (A:127-185 | B:131-185 (gaps) | C:1...)
Exon 1.7a (A:190-279 | B:191-279 | C:189-279 ...)
Exon 1.8 (A:279-329 | B:279-329 | C:279-329 ...)
Exon 1.9 (A:330-380 | B:330-380 | C:330-380 ...)
Exon 1.11 (A:381-436 | B:381-436 | C:381-436 ...)
Exon 1.12 (A:436-497 | B:436-497 | C:436-497 ...)
Exon 1.13b (A:497-531 | B:497-531 | C:497-531 ...)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.1a/1.3a
02: Boundary 1.3a/1.4b
03: Boundary 1.4b/1.5b
04: Boundary 1.5b/1.6a
05: Boundary 1.6a/1.7a
06: Boundary 1.7a/1.8
07: Boundary 1.8/1.9
08: Boundary 1.9/1.11
09: Boundary 1.11/1.12
10: Boundary 1.12/1.13b
11: Boundary 1.13b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000335181
1a
ENSE00001360078
chr15:
72523684-72523457
228
KPYM_HUMAN
-
0
0
-
-
1.3a
ENST00000335181
3a
ENSE00001730487
chr15:
72511451-72511285
167
KPYM_HUMAN
1-52
52
4
A:14-52
B:14-52
C:14-52
D:14-52
39
39
39
39
1.4b
ENST00000335181
4b
ENSE00000374128
chr15:
72509841-72509750
92
KPYM_HUMAN
52-82
31
4
A:52-82
B:52-82
C:52-82
D:52-82
31
31
31
31
1.5b
ENST00000335181
5b
ENSE00000943411
chr15:
72502819-72502688
132
KPYM_HUMAN
83-126
44
4
A:83-126
B:83-125
C:83-126
D:83-121
44
43
44
39
1.6a
ENST00000335181
6a
ENSE00000943412
chr15:
72502200-72502014
187
KPYM_HUMAN
127-189
63
4
A:127-185
B:131-185 (gaps)
C:127-189
D:133-188
59
55
63
56
1.7a
ENST00000335181
7a
ENSE00001504881
chr15:
72501232-72500962
271
KPYM_HUMAN
189-279
91
4
A:190-279
B:191-279
C:189-279
D:191-279
90
89
91
89
1.8
ENST00000335181
8
ENSE00001179435
chr15:
72499618-72499468
151
KPYM_HUMAN
279-329
51
4
A:279-329
B:279-329
C:279-329
D:279-329
51
51
51
51
1.9
ENST00000335181
9
ENSE00001220626
chr15:
72499221-72499069
153
KPYM_HUMAN
330-380
51
4
A:330-380
B:330-380
C:330-380
D:330-380
51
51
51
51
1.11
ENST00000335181
11
ENSE00001220667
chr15:
72494961-72494795
167
KPYM_HUMAN
381-436
56
4
A:381-436
B:381-436
C:381-436
D:381-436
56
56
56
56
1.12
ENST00000335181
12
ENSE00001220742
chr15:
72492996-72492815
182
KPYM_HUMAN
436-497
62
4
A:436-497
B:436-497
C:436-497
D:436-497
62
62
62
62
1.13b
ENST00000335181
13b
ENSE00001179472
chr15:
72492097-72491370
728
KPYM_HUMAN
497-531
35
4
A:497-531
B:497-531
C:497-531 (gaps)
D:497-531
35
35
35
35
[
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]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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