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3GP6
Asym. Unit
Info
Asym.Unit (73 KB)
Biol.Unit 1 (66 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PAGP IN SDS/MPD
Authors
:
J. A. Cuesta-Seijo, G. G. Prive
Date
:
20 Mar 09 (Deposition) - 23 Jun 10 (Release) - 06 Oct 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Palmitoyltransferase, Beta-Barrel, Outer Membrane Enzyme, Pagp, Sds, Mpd, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. A. Cuesta-Seijo, C. Neale, M. A. Khan, J. Moktar, C. D. Tran, R. E. Bishop, R. Pomes, G. G. Prive
Pagp Crystallized From Sds/Cosolvent Reveals The Route For Phospholipid Access To The Hydrocarbon Ruler.
Structure V. 18 1210 2010
[
close entry info
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Hetero Components
(5, 24)
Info
All Hetero Components
1a: LITHIUM ION (LIa)
1b: LITHIUM ION (LIb)
2a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
2b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
2c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
2d: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDd)
2e: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDe)
2f: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDf)
2g: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDg)
2h: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDh)
2i: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDi)
3a: (4R)-2-METHYLPENTANE-2,4-DIOL (MRDa)
4a: DODECYL SULFATE (SDSa)
4b: DODECYL SULFATE (SDSb)
4c: DODECYL SULFATE (SDSc)
4d: DODECYL SULFATE (SDSd)
4e: DODECYL SULFATE (SDSe)
4f: DODECYL SULFATE (SDSf)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
5c: SULFATE ION (SO4c)
5d: SULFATE ION (SO4d)
5e: SULFATE ION (SO4e)
5f: SULFATE ION (SO4f)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
LI
2
Ligand/Ion
LITHIUM ION
2
MPD
9
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
3
MRD
1
Ligand/Ion
(4R)-2-METHYLPENTANE-2,4-DIOL
4
SDS
6
Ligand/Ion
DODECYL SULFATE
5
SO4
6
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:10 , TYR A:70 , ILE A:84 , ARG A:114 , TRP A:156
BINDING SITE FOR RESIDUE SDS A 163
02
AC2
SOFTWARE
ALA A:14 , TRP A:17 , GLN A:18 , PHE A:55 , TYR A:70 , MPD A:174 , MPD A:177
BINDING SITE FOR RESIDUE SDS A 164
03
AC3
SOFTWARE
TRP A:93 , PRO A:95 , LEU A:105 , SER A:130
BINDING SITE FOR RESIDUE SDS A 165
04
AC4
SOFTWARE
ILE A:30 , PHE A:36 , TYR A:46 , PHE A:101 , VAL A:131 , GLY A:132 , TYR A:133 , PRO A:135 , PHE A:138
BINDING SITE FOR RESIDUE SDS A 166
05
AC5
SOFTWARE
TRP A:51 , LYS A:75 , TRP A:81 , SO4 A:180
BINDING SITE FOR RESIDUE SDS A 167
06
AC6
SOFTWARE
SER A:91 , LEU A:105 , GLY A:106 , SO4 A:179
BINDING SITE FOR RESIDUE SDS A 168
07
AC7
SOFTWARE
LEU A:105 , PRO A:127 , LEU A:128 , SO4 A:183 , HOH A:205 , HOH A:231
BINDING SITE FOR RESIDUE MPD A 169
08
AC8
SOFTWARE
ALA A:109 , PRO A:121 , LEU A:122 , PRO A:123 , MPD A:174
BINDING SITE FOR RESIDUE MPD A 170
09
AC9
SOFTWARE
PRO A:20 , GLU A:21 , HIS A:22 , LEU A:162 , SO4 A:184 , LI A:185
BINDING SITE FOR RESIDUE MPD A 171
10
BC1
SOFTWARE
TRP A:5 , PHE A:9 , HOH A:232
BINDING SITE FOR RESIDUE MPD A 172
11
BC2
SOFTWARE
GLY A:53 , ALA A:71 , MET A:72 , SO4 A:180 , HOH A:239
BINDING SITE FOR RESIDUE MPD A 173
12
BC3
SOFTWARE
ARG A:10 , ILE A:13 , TRP A:117 , LEU A:122 , SDS A:164 , MPD A:170
BINDING SITE FOR RESIDUE MPD A 174
13
BC4
SOFTWARE
ASP A:3 , ALA A:97 , ASP A:98 , TYR A:142
BINDING SITE FOR RESIDUE MPD A 175
14
BC5
SOFTWARE
ALA A:113 , PRO A:121
BINDING SITE FOR RESIDUE MPD A 176
15
BC6
SOFTWARE
ASN A:116 , TRP A:117 , ASN A:118 , SDS A:164
BINDING SITE FOR RESIDUE MPD A 177
16
BC7
SOFTWARE
PHE A:9 , ASN A:12 , TYR A:87 , TRP A:89 , PHE A:107
BINDING SITE FOR RESIDUE MRD A 178
17
BC8
SOFTWARE
PHE A:107 , LEU A:125 , LEU A:126 , SDS A:168 , SO4 A:183
BINDING SITE FOR RESIDUE SO4 A 179
18
BC9
SOFTWARE
GLY A:53 , ALA A:73 , TRP A:81 , SDS A:167 , MPD A:173
BINDING SITE FOR RESIDUE SO4 A 180
19
CC1
SOFTWARE
HOH A:233
BINDING SITE FOR RESIDUE SO4 A 181
20
CC2
SOFTWARE
TRP A:17 , LEU A:162 , SO4 A:184
BINDING SITE FOR RESIDUE SO4 A 182
21
CC3
SOFTWARE
ALA A:2 , PRO A:127 , TYR A:142 , MPD A:169 , SO4 A:179
BINDING SITE FOR RESIDUE SO4 A 183
22
CC4
SOFTWARE
TYR A:23 , MPD A:171 , SO4 A:182
BINDING SITE FOR RESIDUE SO4 A 184
23
CC5
SOFTWARE
PRO A:20 , GLU A:21 , HIS A:22 , LEU A:162 , MPD A:171
BINDING SITE FOR RESIDUE LI A 185
24
CC6
SOFTWARE
GLU A:21 , HIS A:22 , HOH A:200 , HOH A:201 , HOH A:215
BINDING SITE FOR RESIDUE LI A 186
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3gp6a_ (A:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Transmembrane beta-barrels
(143)
Superfamily
:
OMPA-like
(26)
Family
:
Outer membrane enzyme PagP
(4)
Protein domain
:
automated matches
(1)
Escherichia coli K-12 [TaxId: 83333]
(1)
1a
d3gp6a_
A:
[
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CATH Domains
(0, 0)
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all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Sorry, no Info available
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Chain A
Asymmetric Unit 1
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select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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