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3GP3
Asym. Unit
Info
Asym.Unit (174 KB)
Biol.Unit 1 (45 KB)
Biol.Unit 2 (44 KB)
Biol.Unit 3 (45 KB)
Biol.Unit 4 (44 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PHOSPHOGLYCEROMUTASE FROM BURKHOLDERIA PSEUDOMALLEI WITH 2-PHOSPHOSERINE
Authors
:
Seattle Structural Genomics Center For Infectious Disease (S
Date
:
20 Mar 09 (Deposition) - 31 Mar 09 (Release) - 05 Oct 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Phosphoglyceromutase, Decode, Sbri, Niaid, Uwppg, Glycolysis, Isomerase, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Ssgcid
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. R. Davies, B. L. Staker, J. A. Abendroth, T. E. Edwards, R. Hartley, J. Leonard, H. Kim, A. L. Rychel, S. N. Hewitt, P. J. Myler, L. J. Stewart
An Ensemble Of Structures Of Burkholderia Pseudomallei 2, 3-Bisphosphoglycerate-Dependent Phosphoglycerate Mutase.
Acta Crystallogr. , Sect. F V. 67 1044 2011
[
close entry info
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Hetero Components
(3, 14)
Info
All Hetero Components
1a: TETRAETHYLENE GLYCOL (PG4a)
1b: TETRAETHYLENE GLYCOL (PG4b)
1c: TETRAETHYLENE GLYCOL (PG4c)
1d: TETRAETHYLENE GLYCOL (PG4d)
1e: TETRAETHYLENE GLYCOL (PG4e)
1f: TETRAETHYLENE GLYCOL (PG4f)
2a: PHOSPHITE ION (PO3a)
2b: PHOSPHITE ION (PO3b)
2c: PHOSPHITE ION (PO3c)
2d: PHOSPHITE ION (PO3d)
3a: PHOSPHOSERINE (SEPa)
3b: PHOSPHOSERINE (SEPb)
3c: PHOSPHOSERINE (SEPc)
3d: PHOSPHOSERINE (SEPd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
PG4
6
Ligand/Ion
TETRAETHYLENE GLYCOL
2
PO3
4
Ligand/Ion
PHOSPHITE ION
3
SEP
4
Mod. Residue
PHOSPHOSERINE
[
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:51 , ALA A:173 , LYS A:175
BINDING SITE FOR RESIDUE PG4 A 250
02
AC2
SOFTWARE
ARG A:8 , HIS A:9 , ASN A:15 , ARG A:60 , GLU A:87 , HIS A:182 , GLY A:183 , SEP A:252 , HOH A:274
BINDING SITE FOR RESIDUE PO3 A 251
03
AC3
SOFTWARE
ARG A:8 , ASN A:15 , ARG A:19 , THR A:21 , GLY A:22 , GLU A:87 , ARG A:88 , TYR A:90 , LYS A:98 , ARG A:114 , ARG A:115 , ASN A:184 , PO3 A:251 , HOH A:278
BINDING SITE FOR RESIDUE SEP A 252
04
AC4
SOFTWARE
ASP B:51 , ALA B:173 , LYS B:175
BINDING SITE FOR RESIDUE PG4 B 250
05
AC5
SOFTWARE
ARG B:8 , HIS B:9 , ASN B:15 , ARG B:60 , GLU B:87 , HIS B:182 , GLY B:183 , SEP B:252 , HOH B:279
BINDING SITE FOR RESIDUE PO3 B 251
06
AC6
SOFTWARE
ARG B:8 , ASN B:15 , ARG B:19 , THR B:21 , GLY B:22 , GLU B:87 , TYR B:90 , LYS B:98 , ARG B:114 , ARG B:115 , ASN B:184 , PO3 B:251 , HOH B:299
BINDING SITE FOR RESIDUE SEP B 252
07
AC7
SOFTWARE
ASP C:51 , ALA C:173 , LYS C:175 , HOH C:552
BINDING SITE FOR RESIDUE PG4 C 250
08
AC8
SOFTWARE
ILE C:196 , LEU C:204 , HIS C:225 , HOH C:332 , HOH C:556
BINDING SITE FOR RESIDUE PG4 C 251
09
AC9
SOFTWARE
ARG C:8 , HIS C:9 , ASN C:15 , ARG C:60 , GLU C:87 , HIS C:182 , GLY C:183 , SEP C:253
BINDING SITE FOR RESIDUE PO3 C 252
10
BC1
SOFTWARE
ARG C:8 , ASN C:15 , ARG C:19 , PHE C:20 , THR C:21 , GLY C:22 , GLU C:87 , TYR C:90 , LYS C:98 , ARG C:114 , ARG C:115 , ASN C:184 , PO3 C:252 , HOH C:305
BINDING SITE FOR RESIDUE SEP C 253
11
BC2
SOFTWARE
ASP D:51 , ALA D:173 , LYS D:175 , HOH D:601
BINDING SITE FOR RESIDUE PG4 D 250
12
BC3
SOFTWARE
ILE D:190 , ILE D:196 , TYR D:214 , HIS D:225 , TYR D:227 , HOH D:282 , HOH D:374 , HOH D:706
BINDING SITE FOR RESIDUE PG4 D 251
13
BC4
SOFTWARE
ARG D:8 , HIS D:9 , ASN D:15 , ARG D:60 , GLU D:87 , HIS D:182 , GLY D:183 , SEP D:253 , HOH D:290
BINDING SITE FOR RESIDUE PO3 D 252
14
BC5
SOFTWARE
ARG D:8 , ASN D:15 , ARG D:19 , PHE D:20 , THR D:21 , GLY D:22 , GLU D:87 , TYR D:90 , LYS D:98 , ARG D:114 , ARG D:115 , ASN D:184 , PO3 D:252 , HOH D:295
BINDING SITE FOR RESIDUE SEP D 253
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: PG_MUTASE (A:6-15,B:6-15,C:6-15,D:6-15,A:6-15...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PG_MUTASE
PS00175
Phosphoglycerate mutase family phosphohistidine signature.
GPMA_BURP1
6-15
4
A:6-15
B:6-15
C:6-15
D:6-15
GPMA_BURPS
6-15
4
A:6-15
B:6-15
C:6-15
D:6-15
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3gp3a_ (A:)
1b: SCOP_d3gp3b_ (B:)
1c: SCOP_d3gp3c_ (C:)
1d: SCOP_d3gp3d_ (D:)
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Protein Domains
(
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Phosphoglycerate mutase-like
(103)
Superfamily
:
Phosphoglycerate mutase-like
(103)
Family
:
Cofactor-dependent phosphoglycerate mutase
(57)
Protein domain
:
automated matches
(41)
Burkholderia pseudomallei [TaxId: 28450]
(3)
1a
d3gp3a_
A:
1b
d3gp3b_
B:
1c
d3gp3c_
C:
1d
d3gp3d_
D:
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_3gp3A00 (A:1-229)
1b: CATH_3gp3B00 (B:1-229)
1c: CATH_3gp3C00 (C:1-230)
1d: CATH_3gp3D00 (D:1-230)
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
Phosphoglycerate mutase-like
(91)
Pseudomonas pseudomallei (Burkholderia pseudomallei)
(3)
1a
3gp3A00
A:1-229
1b
3gp3B00
B:1-229
1c
3gp3C00
C:1-230
1d
3gp3D00
D:1-230
[
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Pfam Domains
(0, 0)
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all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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Asym.Unit (174 KB)
Header - Asym.Unit
Biol.Unit 1 (45 KB)
Header - Biol.Unit 1
Biol.Unit 2 (44 KB)
Header - Biol.Unit 2
Biol.Unit 3 (45 KB)
Header - Biol.Unit 3
Biol.Unit 4 (44 KB)
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