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Getting 'Exon' information from database.
3GOK
Asym. Unit
Info
Asym.Unit (590 KB)
Biol.Unit 1 (568 KB)
Biol.Unit 10 (56 KB)
Biol.Unit 11 (55 KB)
Biol.Unit 12 (55 KB)
Biol.Unit 13 (56 KB)
Biol.Unit 14 (55 KB)
Biol.Unit 15 (55 KB)
Biol.Unit 16 (56 KB)
Biol.Unit 17 (55 KB)
Biol.Unit 2 (148 KB)
Biol.Unit 3 (148 KB)
Biol.Unit 4 (149 KB)
Biol.Unit 5 (148 KB)
Biol.Unit 6 (55 KB)
Biol.Unit 7 (56 KB)
Biol.Unit 8 (55 KB)
Biol.Unit 9 (54 KB)
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(1)
Title
:
BINDING SITE MAPPING OF PROTEIN LIGANDS
Authors
:
C. Scheich
Date
:
19 Mar 09 (Deposition) - 02 Mar 10 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L (1x)
Biol. Unit 2: A,B,C (1x)
Biol. Unit 3: D,E,F (1x)
Biol. Unit 4: G,H,I (1x)
Biol. Unit 5: J,K,L (1x)
Biol. Unit 6: A (1x)
Biol. Unit 7: B (1x)
Biol. Unit 8: C (1x)
Biol. Unit 9: D (1x)
Biol. Unit 10: E (1x)
Biol. Unit 11: F (1x)
Biol. Unit 12: G (1x)
Biol. Unit 13: H (1x)
Biol. Unit 14: I (1x)
Biol. Unit 15: J (1x)
Biol. Unit 16: K (1x)
Biol. Unit 17: L (1x)
Keywords
:
Mk2, Mapkap Kinase 2, Isotope Labelling, Insect Cell Expression, Atp- Binding, Kinase, Nucleotide-Binding, Phosphoprotein, Serine/Threonine-Protein Kinase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Scheich, M. A. Smith, J. D. Barker, J. Kahmann, T. Hesterkamp, M. Schade
Binding Site Mapping Of Protein Ligands
To Be Published
[
close entry info
]
Hetero Components
(1, 12)
Info
All Hetero Components
1a: 2-(2-QUINOLIN-3-YLPYRIDIN-4-YL)-1,... (P4Oa)
1b: 2-(2-QUINOLIN-3-YLPYRIDIN-4-YL)-1,... (P4Ob)
1c: 2-(2-QUINOLIN-3-YLPYRIDIN-4-YL)-1,... (P4Oc)
1d: 2-(2-QUINOLIN-3-YLPYRIDIN-4-YL)-1,... (P4Od)
1e: 2-(2-QUINOLIN-3-YLPYRIDIN-4-YL)-1,... (P4Oe)
1f: 2-(2-QUINOLIN-3-YLPYRIDIN-4-YL)-1,... (P4Of)
1g: 2-(2-QUINOLIN-3-YLPYRIDIN-4-YL)-1,... (P4Og)
1h: 2-(2-QUINOLIN-3-YLPYRIDIN-4-YL)-1,... (P4Oh)
1i: 2-(2-QUINOLIN-3-YLPYRIDIN-4-YL)-1,... (P4Oi)
1j: 2-(2-QUINOLIN-3-YLPYRIDIN-4-YL)-1,... (P4Oj)
1k: 2-(2-QUINOLIN-3-YLPYRIDIN-4-YL)-1,... (P4Ok)
1l: 2-(2-QUINOLIN-3-YLPYRIDIN-4-YL)-1,... (P4Ol)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
P4O
12
Ligand/Ion
2-(2-QUINOLIN-3-YLPYRIDIN-4-YL)-1,5,6,7-TETRAHYDRO-4H-PYRROLO[3,2-C]PYRIDIN-4-ONE
[
close Hetero Component info
]
Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LEU A:70 , LEU A:72 , GLY A:73 , ALA A:91 , LYS A:93 , GLU A:139 , CYS A:140 , LEU A:141 , ASP A:142 , ASN A:191 , LEU A:193 , ASP A:207
BINDING SITE FOR RESIDUE P4O A 1
02
AC2
SOFTWARE
LEU B:70 , LEU B:72 , GLY B:73 , VAL B:78 , ALA B:91 , LYS B:93 , GLU B:139 , CYS B:140 , LEU B:141 , ASP B:142 , ASN B:191 , LEU B:193 , ASP B:207
BINDING SITE FOR RESIDUE P4O B 1
03
AC3
SOFTWARE
LEU C:70 , LEU C:72 , GLY C:73 , VAL C:78 , ALA C:91 , LYS C:93 , GLU C:139 , CYS C:140 , LEU C:141 , ASP C:142 , LEU C:193 , ASP C:207
BINDING SITE FOR RESIDUE P4O C 1
04
AC4
SOFTWARE
LEU D:70 , LEU D:72 , GLY D:73 , LYS D:93 , GLU D:139 , CYS D:140 , LEU D:141 , ASP D:142 , LEU D:193 , THR D:206 , ASP D:207
BINDING SITE FOR RESIDUE P4O D 1
05
AC5
SOFTWARE
LEU E:70 , GLY E:73 , VAL E:78 , ALA E:91 , LYS E:93 , MET E:138 , GLU E:139 , CYS E:140 , LEU E:141 , ASP E:142 , ASN E:191 , LEU E:193 , ASP E:207
BINDING SITE FOR RESIDUE P4O E 1
06
AC6
SOFTWARE
LEU F:70 , LEU F:72 , GLY F:73 , VAL F:78 , ALA F:91 , LYS F:93 , MET F:138 , GLU F:139 , CYS F:140 , LEU F:141 , ASP F:142 , LEU F:193 , ASP F:207
BINDING SITE FOR RESIDUE P4O F 1
07
AC7
SOFTWARE
LEU G:72 , GLY G:73 , ALA G:91 , LYS G:93 , MET G:138 , GLU G:139 , CYS G:140 , LEU G:141 , ASP G:142 , ASN G:191 , LEU G:193 , THR G:206 , ASP G:207
BINDING SITE FOR RESIDUE P4O G 1
08
AC8
SOFTWARE
LEU H:70 , GLY H:73 , VAL H:78 , ALA H:91 , LYS H:93 , GLU H:139 , CYS H:140 , LEU H:141 , ASP H:142 , ASN H:191 , LEU H:193 , ASP H:207
BINDING SITE FOR RESIDUE P4O H 1
09
AC9
SOFTWARE
LEU I:70 , LEU I:72 , GLY I:73 , VAL I:78 , ALA I:91 , LYS I:93 , GLU I:139 , CYS I:140 , LEU I:141 , ASP I:142 , ASN I:191 , LEU I:193 , ASP I:207
BINDING SITE FOR RESIDUE P4O I 1
10
BC1
SOFTWARE
LEU J:70 , LEU J:72 , GLY J:73 , VAL J:78 , ALA J:91 , LYS J:93 , GLU J:139 , CYS J:140 , LEU J:141 , ASN J:191 , LEU J:193 , ASP J:207
BINDING SITE FOR RESIDUE P4O J 1
11
BC2
SOFTWARE
LEU K:70 , LEU K:72 , GLY K:73 , LYS K:93 , GLU K:139 , CYS K:140 , LEU K:141 , ASP K:142 , ASN K:191 , LEU K:193 , THR K:206 , ASP K:207
BINDING SITE FOR RESIDUE P4O K 1
12
BC3
SOFTWARE
LEU L:70 , LEU L:72 , GLY L:73 , VAL L:78 , LYS L:93 , GLU L:139 , LEU L:141 , ASP L:142 , ASN L:191 , LEU L:193 , ASP L:207
BINDING SITE FOR RESIDUE P4O L 1
[
close Site info
]
SAPs(SNPs)/Variants
(1, 12)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_040753 (A173G, chain A/B/C/D/E/F/G/H/I/J/K/L, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_040753
A
173
G
MAPK2_HUMAN
Polymorphism
35671930
A/B/C/D/E/F/G/H/I/J/K/L
A
173
G
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 24)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:70-93,B:70-93,C:70-93,D:70-93,E:...)
2: PROTEIN_KINASE_ST (A:182-194,B:182-194,C:182-194,D:18...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
MAPK2_HUMAN
70-93
12
A:70-93
B:70-93
C:70-93
D:70-93
E:70-93
F:70-93
G:70-93
H:70-93
I:70-93
J:70-93
K:70-93
L:70-93
2
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
MAPK2_HUMAN
182-194
12
A:182-194
B:182-194
C:182-194
D:182-194
E:182-194
F:182-194
G:182-194
H:182-194
I:182-194
J:182-194
K:182-194
L:182-194
[
close PROSITE info
]
Exons
(9, 108)
Info
All Exons
Exon 1.1b (A:46-93 | B:46-93 | C:46-93 | D:46...)
Exon 1.2 (A:94-140 | B:94-140 | C:94-140 | D...)
Exon 1.3b (A:140-162 (gaps) | B:140-162 | C:1...)
Exon 1.4b (A:162-188 | B:162-188 | C:162-188 ...)
Exon 1.5 (A:189-231 (gaps) | B:189-231 (gaps...)
Exon 1.6 (A:231-256 | B:231-256 | C:231-256 ...)
Exon 1.7 (A:256-298 (gaps) | B:256-298 (gaps...)
Exon 1.8b (A:298-326 | B:298-326 | C:298-326 ...)
Exon 1.9b (A:327-350 | B:327-350 | C:327-350 ...)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1b
02: Boundary 1.1b/1.2
03: Boundary 1.2/1.3b
04: Boundary 1.3b/1.4b
05: Boundary 1.4b/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/1.8b
09: Boundary 1.8b/1.9b
10: Boundary 1.9b/1.9d
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000367103
1b
ENSE00001825387
chr1:
206858382-206858853
472
MAPK2_HUMAN
1-93
93
12
A:46-93
B:46-93
C:46-93
D:46-93
E:46-93
F:46-93
G:46-93
H:46-93
I:46-93
J:46-93
K:46-93
L:46-93
48
48
48
48
48
48
48
48
48
48
48
48
1.2
ENST00000367103
2
ENSE00001069545
chr1:
206902055-206902194
140
MAPK2_HUMAN
94-140
47
12
A:94-140
B:94-140
C:94-140
D:94-140
E:94-140
F:94-140
G:94-140
H:94-140
I:94-140
J:94-140
K:94-140
L:94-140
47
47
47
47
47
47
47
47
47
47
47
47
1.3b
ENST00000367103
3b
ENSE00001069547
chr1:
206902380-206902444
65
MAPK2_HUMAN
140-162
23
12
A:140-162 (gaps)
B:140-162
C:140-162 (gaps)
D:140-162 (gaps)
E:140-162
F:140-162 (gaps)
G:140-162 (gaps)
H:140-162
I:140-162 (gaps)
J:140-162 (gaps)
K:140-162
L:140-162 (gaps)
23
23
23
23
23
23
23
23
23
23
23
23
1.4b
ENST00000367103
4b
ENSE00001069548
chr1:
206902741-206902820
80
MAPK2_HUMAN
162-188
27
12
A:162-188
B:162-188
C:162-188
D:162-188
E:162-188
F:162-188
G:162-188
H:162-188
I:162-188
J:162-188
K:162-188
L:162-188
27
27
27
27
27
27
27
27
27
27
27
27
1.5
ENST00000367103
5
ENSE00001069551
chr1:
206903317-206903443
127
MAPK2_HUMAN
189-231
43
12
A:189-231 (gaps)
B:189-231 (gaps)
C:189-231 (gaps)
D:189-231 (gaps)
E:189-231 (gaps)
F:189-231 (gaps)
G:189-231 (gaps)
H:189-231 (gaps)
I:189-231 (gaps)
J:189-231 (gaps)
K:189-231 (gaps)
L:189-231 (gaps)
43
43
43
43
43
43
43
43
43
43
43
43
1.6
ENST00000367103
6
ENSE00001648220
chr1:
206904033-206904108
76
MAPK2_HUMAN
231-256
26
12
A:231-256
B:231-256
C:231-256
D:231-256
E:231-256
F:231-256
G:231-256
H:231-256
I:231-256
J:231-256
K:231-256
L:231-256
26
26
26
26
26
26
26
26
26
26
26
26
1.7
ENST00000367103
7
ENSE00001069544
chr1:
206904483-206904607
125
MAPK2_HUMAN
256-298
43
12
A:256-298 (gaps)
B:256-298 (gaps)
C:256-298 (gaps)
D:256-298 (gaps)
E:256-298 (gaps)
F:256-298 (gaps)
G:256-298 (gaps)
H:256-298 (gaps)
I:256-298 (gaps)
J:256-298 (gaps)
K:256-298 (gaps)
L:256-298 (gaps)
43
43
43
43
43
43
43
43
43
43
43
43
1.8b
ENST00000367103
8b
ENSE00001069550
chr1:
206904985-206905070
86
MAPK2_HUMAN
298-326
29
12
A:298-326
B:298-326
C:298-326
D:298-326
E:298-326
F:298-326
G:298-326
H:298-326
I:298-326
J:298-326
K:298-326
L:298-326
29
29
29
29
29
29
29
29
29
29
29
29
1.9b
ENST00000367103
9b
ENSE00001069552
chr1:
206905184-206905264
81
MAPK2_HUMAN
327-353
27
12
A:327-350
B:327-350
C:327-350
D:327-350
E:327-350
F:327-350
G:327-350
H:327-350
I:327-350
J:327-350
K:327-350
L:327-350
24
24
24
24
24
24
24
24
24
24
24
24
1.9d
ENST00000367103
9d
ENSE00001443498
chr1:
206905920-206907628
1709
MAPK2_HUMAN
354-400
47
0
-
-
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(2, 24)
Info
all CATH domains
1a: CATH_3gokA01 (A:59-140)
1b: CATH_3gokB01 (B:59-140)
1c: CATH_3gokC01 (C:59-140)
1d: CATH_3gokD01 (D:59-140)
1e: CATH_3gokE01 (E:59-140)
1f: CATH_3gokF01 (F:59-140)
1g: CATH_3gokG01 (G:59-140)
1h: CATH_3gokH01 (H:59-140)
1i: CATH_3gokI01 (I:59-140)
1j: CATH_3gokJ01 (J:59-140)
1k: CATH_3gokK01 (K:59-140)
1l: CATH_3gokL01 (L:59-140)
2a: CATH_3gokB02 (B:141-342)
2b: CATH_3gokE02 (E:141-342)
2c: CATH_3gokH02 (H:141-342)
2d: CATH_3gokK02 (K:141-342)
2e: CATH_3gokG02 (G:141-342)
2f: CATH_3gokA02 (A:141-342)
2g: CATH_3gokC02 (C:141-342)
2h: CATH_3gokF02 (F:141-342)
2i: CATH_3gokI02 (I:141-342)
2j: CATH_3gokL02 (L:141-342)
2k: CATH_3gokD02 (D:141-342)
2l: CATH_3gokJ02 (J:141-342)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Human (Homo sapiens)
(1036)
1a
3gokA01
A:59-140
1b
3gokB01
B:59-140
1c
3gokC01
C:59-140
1d
3gokD01
D:59-140
1e
3gokE01
E:59-140
1f
3gokF01
F:59-140
1g
3gokG01
G:59-140
1h
3gokH01
H:59-140
1i
3gokI01
I:59-140
1j
3gokJ01
J:59-140
1k
3gokK01
K:59-140
1l
3gokL01
L:59-140
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Transferase(Phosphotransferase); domain 1
(1379)
Homologous Superfamily
:
Transferase(Phosphotransferase) domain 1
(1379)
Human (Homo sapiens)
(1049)
2a
3gokB02
B:141-342
2b
3gokE02
E:141-342
2c
3gokH02
H:141-342
2d
3gokK02
K:141-342
2e
3gokG02
G:141-342
2f
3gokA02
A:141-342
2g
3gokC02
C:141-342
2h
3gokF02
F:141-342
2i
3gokI02
I:141-342
2j
3gokL02
L:141-342
2k
3gokD02
D:141-342
2l
3gokJ02
J:141-342
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
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Atom Selection
(currently selected atoms:
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Nucleic
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All Atoms
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Protein & NOT Site
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Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Chain K
Chain L
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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Show PDB file:
Asym.Unit (590 KB)
Header - Asym.Unit
Biol.Unit 1 (568 KB)
Header - Biol.Unit 1
Biol.Unit 10 (56 KB)
Header - Biol.Unit 10
Biol.Unit 11 (55 KB)
Header - Biol.Unit 11
Biol.Unit 12 (55 KB)
Header - Biol.Unit 12
Biol.Unit 13 (56 KB)
Header - Biol.Unit 13
Biol.Unit 14 (55 KB)
Header - Biol.Unit 14
Biol.Unit 15 (55 KB)
Header - Biol.Unit 15
Biol.Unit 16 (56 KB)
Header - Biol.Unit 16
Biol.Unit 17 (55 KB)
Header - Biol.Unit 17
Biol.Unit 2 (148 KB)
Header - Biol.Unit 2
Biol.Unit 3 (148 KB)
Header - Biol.Unit 3
Biol.Unit 4 (149 KB)
Header - Biol.Unit 4
Biol.Unit 5 (148 KB)
Header - Biol.Unit 5
Biol.Unit 6 (55 KB)
Header - Biol.Unit 6
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Biol.Unit 8 (55 KB)
Header - Biol.Unit 8
Biol.Unit 9 (54 KB)
Header - Biol.Unit 9
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