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3GLC
Asym. Unit
Info
Asym.Unit (867 KB)
Biol.Unit 1 (435 KB)
Biol.Unit 2 (433 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF E. COLI LSRF IN COMPLEX WITH RIBOSE-5-PHOSPHATE
Authors
:
S. T. Miller, Z. C. Diaz
Date
:
11 Mar 09 (Deposition) - 08 Sep 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J (1x)
Biol. Unit 2: K,L,M,N,O,P,Q,R,S,T (1x)
Keywords
:
Tim Barrel, Lyase, Schiff Base
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Z. Diaz, K. B. Xavier, S. T. Miller
The Crystal Structure Of The Escherichia Coli Autoinducer-2 Processing Protein Lsrf.
Plos One V. 4 E6820 2009
[
close entry info
]
Hetero Components
(1, 20)
Info
All Hetero Components
1a: RIBOSE-5-PHOSPHATE (R5Pa)
1b: RIBOSE-5-PHOSPHATE (R5Pb)
1c: RIBOSE-5-PHOSPHATE (R5Pc)
1d: RIBOSE-5-PHOSPHATE (R5Pd)
1e: RIBOSE-5-PHOSPHATE (R5Pe)
1f: RIBOSE-5-PHOSPHATE (R5Pf)
1g: RIBOSE-5-PHOSPHATE (R5Pg)
1h: RIBOSE-5-PHOSPHATE (R5Ph)
1i: RIBOSE-5-PHOSPHATE (R5Pi)
1j: RIBOSE-5-PHOSPHATE (R5Pj)
1k: RIBOSE-5-PHOSPHATE (R5Pk)
1l: RIBOSE-5-PHOSPHATE (R5Pl)
1m: RIBOSE-5-PHOSPHATE (R5Pm)
1n: RIBOSE-5-PHOSPHATE (R5Pn)
1o: RIBOSE-5-PHOSPHATE (R5Po)
1p: RIBOSE-5-PHOSPHATE (R5Pp)
1q: RIBOSE-5-PHOSPHATE (R5Pq)
1r: RIBOSE-5-PHOSPHATE (R5Pr)
1s: RIBOSE-5-PHOSPHATE (R5Ps)
1t: RIBOSE-5-PHOSPHATE (R5Pt)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
R5P
20
Ligand/Ion
RIBOSE-5-PHOSPHATE
[
close Hetero Component info
]
Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:57 , HIS A:58 , GLN A:141 , LYS A:203 , GLY A:226 , GLY A:227 , ASP A:251 , MET A:252 , GLY A:253 , ARG A:254
BINDING SITE FOR RESIDUE R5P A 400
02
AC2
SOFTWARE
ASP B:57 , HIS B:58 , GLN B:141 , LYS B:203 , ALA B:225 , GLY B:226 , GLY B:227 , ASP B:251 , MET B:252 , GLY B:253 , ARG B:254
BINDING SITE FOR RESIDUE R5P B 400
03
AC3
SOFTWARE
ASP C:57 , HIS C:58 , LYS C:203 , ALA C:225 , GLY C:226 , GLY C:227 , ASP C:251 , MET C:252 , GLY C:253 , ARG C:254
BINDING SITE FOR RESIDUE R5P C 400
04
AC4
SOFTWARE
ASP D:57 , HIS D:58 , ARG D:107 , GLN D:141 , LYS D:203 , ALA D:225 , GLY D:226 , GLY D:227 , ASP D:251 , MET D:252 , GLY D:253 , ARG D:254
BINDING SITE FOR RESIDUE R5P D 400
05
AC5
SOFTWARE
ASP E:57 , HIS E:58 , GLN E:141 , LYS E:203 , ALA E:225 , GLY E:226 , GLY E:227 , ASP E:251 , MET E:252 , GLY E:253 , ARG E:254
BINDING SITE FOR RESIDUE R5P E 400
06
AC6
SOFTWARE
ASP F:57 , HIS F:58 , LYS F:203 , ALA F:225 , GLY F:226 , GLY F:227 , ASP F:251 , MET F:252 , GLY F:253 , ARG F:254
BINDING SITE FOR RESIDUE R5P F 400
07
AC7
SOFTWARE
ASP G:57 , HIS G:58 , GLN G:141 , LYS G:203 , ALA G:225 , GLY G:226 , GLY G:227 , ASP G:251 , MET G:252 , GLY G:253 , ARG G:254
BINDING SITE FOR RESIDUE R5P G 400
08
AC8
SOFTWARE
ASP H:57 , HIS H:58 , ARG H:107 , LYS H:203 , ALA H:225 , GLY H:226 , GLY H:227 , ASP H:251 , MET H:252 , GLY H:253 , ARG H:254
BINDING SITE FOR RESIDUE R5P H 400
09
AC9
SOFTWARE
ASP I:57 , HIS I:58 , GLN I:141 , LYS I:203 , GLY I:226 , GLY I:227 , ASP I:251 , MET I:252 , GLY I:253 , ARG I:254
BINDING SITE FOR RESIDUE R5P I 400
10
BC1
SOFTWARE
ASP J:57 , HIS J:58 , ARG J:107 , LYS J:203 , GLY J:226 , GLY J:227 , ASP J:251 , MET J:252 , GLY J:253 , ARG J:254
BINDING SITE FOR RESIDUE R5P J 400
11
BC2
SOFTWARE
ASP K:57 , HIS K:58 , GLN K:141 , LYS K:203 , ALA K:225 , GLY K:226 , GLY K:227 , ASP K:251 , MET K:252 , GLY K:253 , ARG K:254
BINDING SITE FOR RESIDUE R5P K 400
12
BC3
SOFTWARE
ASP L:57 , HIS L:58 , GLN L:141 , LYS L:203 , ALA L:225 , GLY L:226 , GLY L:227 , ASP L:251 , MET L:252 , GLY L:253 , ARG L:254
BINDING SITE FOR RESIDUE R5P L 400
13
BC4
SOFTWARE
ASP M:57 , HIS M:58 , ARG M:107 , GLN M:141 , LYS M:203 , ALA M:225 , GLY M:226 , GLY M:227 , ASP M:251 , MET M:252 , GLY M:253 , ARG M:254
BINDING SITE FOR RESIDUE R5P M 400
14
BC5
SOFTWARE
ASP N:57 , HIS N:58 , ARG N:107 , GLN N:141 , LYS N:203 , GLY N:226 , GLY N:227 , ASP N:251 , MET N:252 , GLY N:253 , ARG N:254
BINDING SITE FOR RESIDUE R5P N 400
15
BC6
SOFTWARE
ASP O:57 , HIS O:58 , ARG O:107 , LYS O:203 , GLY O:226 , GLY O:227 , ASP O:251 , MET O:252 , GLY O:253 , ARG O:254
BINDING SITE FOR RESIDUE R5P O 400
16
BC7
SOFTWARE
ASP P:57 , HIS P:58 , ARG P:107 , LYS P:203 , ALA P:225 , GLY P:226 , GLY P:227 , ASP P:251 , MET P:252 , GLY P:253 , ARG P:254
BINDING SITE FOR RESIDUE R5P P 400
17
BC8
SOFTWARE
ASP Q:57 , HIS Q:58 , GLN Q:141 , LYS Q:203 , GLY Q:226 , GLY Q:227 , ASP Q:251 , MET Q:252 , GLY Q:253 , ARG Q:254
BINDING SITE FOR RESIDUE R5P Q 400
18
BC9
SOFTWARE
ASP R:57 , HIS R:58 , LYS R:203 , GLY R:226 , GLY R:227 , ASP R:251 , MET R:252 , GLY R:253 , ARG R:254
BINDING SITE FOR RESIDUE R5P R 400
19
CC1
SOFTWARE
ASP S:57 , HIS S:58 , GLN S:141 , LYS S:203 , ALA S:225 , GLY S:226 , GLY S:227 , ASP S:251 , MET S:252 , GLY S:253 , ARG S:254
BINDING SITE FOR RESIDUE R5P S 400
20
CC2
SOFTWARE
ASP T:57 , HIS T:58 , ARG T:107 , GLN T:141 , LYS T:203 , ALA T:225 , GLY T:226 , GLY T:227 , ASP T:251 , MET T:252 , GLY T:253 , ARG T:254
BINDING SITE FOR RESIDUE R5P T 400
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Info
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;
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Sorry, no Info available
[
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
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wireframe 100
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Asym.Unit (867 KB)
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