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3GKO
Asym. Unit
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Asym.Unit (63 KB)
Biol.Unit 1 (227 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF URATE OXYDASE USING SURFACTANT POLOXAMER 188 AS A NEW CRYSTALLIZING AGENT
Authors
:
V. Delfosse, M. Giffard, G. Sciara, F. Bonnete, C. Mayer
Date
:
11 Mar 09 (Deposition) - 23 Feb 10 (Release) - 23 Feb 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A
Biol. Unit 1: A (4x)
Keywords
:
Urate Oxydase, Surfactant, Poloxamer P188, Acetylation, Oxidoreductase, Peroxisome, Purine Metabolism
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
M. Giffard, V. Delfosse, G. Sciara, C. Mayer, C. Cambillau, M. El Hajji, B. Castro, F. Bonnete
Surfactant Poloxamer 188 As A New Crystallizing Agent For Urate Oxidase
Cryst. Growth Des. V. 9 4199 2009
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Hetero Components
(3, 4)
Info
All Hetero Components
1a: 8-AZAXANTHINE (AZAa)
2a: POTASSIUM ION (Ka)
2b: POTASSIUM ION (Kb)
3a: N-ACETYL-SERINE (SACa)
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No.
Name
Count
Type
Full Name
1
AZA
1
Ligand/Ion
8-AZAXANTHINE
2
K
2
Ligand/Ion
POTASSIUM ION
3
SAC
1
Mod. Amino Acid
N-ACETYL-SERINE
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Sites
(3, 3)
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All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE A:54 , ALA A:56 , THR A:57 , PHE A:159 , LEU A:170 , ARG A:176 , SER A:226 , VAL A:227 , GLN A:228 , ASN A:254 , K A:304 , HOH A:667
BINDING SITE FOR RESIDUE AZA A 302
2
AC2
SOFTWARE
ILE A:88 , TYR A:91 , ASN A:92 , ILE A:94 , GLU A:136
BINDING SITE FOR RESIDUE K A 303
3
AC3
SOFTWARE
THR A:57 , ASN A:254 , GLY A:286 , AZA A:302
BINDING SITE FOR RESIDUE K A 304
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
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1: URICASE (A:149-176)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
URICASE
PS00366
Uricase signature.
URIC_ASPFL
150-177
1
A:149-176
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3gkoa1 (A:1-136)
1b: SCOP_d3gkoa2 (A:137-296)
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)
Protein Domains
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)
Organisms
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)
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)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
T-fold
(116)
Superfamily
:
Tetrahydrobiopterin biosynthesis enzymes-like
(113)
Family
:
Urate oxidase (uricase)
(60)
Protein domain
:
Urate oxidase (uricase)
(56)
Aspergillus flavus [TaxId: 5059]
(53)
1a
d3gkoa1
A:1-136
1b
d3gkoa2
A:137-296
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CATH Domains
(1, 1)
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all CATH domains
1a: CATH_3gkoA00 (A:2-296)
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Organisms
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)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Urate Oxidase
(38)
Homologous Superfamily
:
Urate Oxidase;
(38)
Aspergillus flavus. Organism_taxid: 5059.
(14)
1a
3gkoA00
A:2-296
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Pfam Domains
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Chain A
Asymmetric Unit 1
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