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3GJX
Asym. Unit
Info
Asym.Unit (1.0 MB)
Biol.Unit 1 (515 KB)
Biol.Unit 2 (521 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE NUCLEAR EXPORT COMPLEX CRM1-SNURPORTIN1-RANGTP
Authors
:
T. Monecke, T. Guettler, P. Neumann, A. Dickmanns, D. Goerlich, R. Ficner
Date
:
09 Mar 09 (Deposition) - 26 May 09 (Release) - 26 May 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Transport, Cytoplasm, Nucleus, Rna-Binding, Acetylation, Gtp-Binding, Host-Virus Interaction, Nucleotide-Binding, Phosphoprotein, Polymorphism, Protein Transport, Mrna Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Monecke, T. Guttler, P. Neumann, A. Dickmanns, D. Gorlich, R. Ficner
Crystal Structure Of The Nuclear Export Receptor Crm1 In Complex With Snurportin1 And Rangtp.
Science 2009
(for further references see the
PDB file header
)
[
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Hetero Components
(4, 7)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
2b: GUANOSINE-5'-TRIPHOSPHATE (GTPb)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
GTP
2
Ligand/Ion
GUANOSINE-5'-TRIPHOSPHATE
3
MG
2
Ligand/Ion
MAGNESIUM ION
4
NA
2
Ligand/Ion
SODIUM ION
[
close Hetero Component info
]
Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER B:41 , GLU B:106 , TRP B:107 , ILE B:109
BINDING SITE FOR RESIDUE NA B 361
2
AC2
SOFTWARE
GLY C:19 , GLY C:20 , THR C:21 , GLY C:22 , LYS C:23 , THR C:24 , THR C:25 , GLU C:36 , LYS C:37 , LYS C:38 , TYR C:39 , ALA C:41 , THR C:42 , ALA C:67 , GLY C:68 , ASN C:122 , LYS C:123 , ASP C:125 , ILE C:126 , SER C:150 , ALA C:151 , LYS C:152 , MG C:218 , HOH C:221 , HOH C:223 , HOH C:378 , HOH C:555 , HOH C:897
BINDING SITE FOR RESIDUE GTP C 217
3
AC3
SOFTWARE
THR C:24 , THR C:42 , ASP C:65 , THR C:66 , GTP C:217
BINDING SITE FOR RESIDUE MG C 218
4
AC4
SOFTWARE
ASP E:17 , LEU E:18 , SER E:20 , GLU E:106 , SER E:270
BINDING SITE FOR RESIDUE NA E 361
5
AC5
SOFTWARE
PRO E:351
BINDING SITE FOR RESIDUE CL E 362
6
AC6
SOFTWARE
GLY F:19 , GLY F:20 , THR F:21 , GLY F:22 , LYS F:23 , THR F:24 , THR F:25 , GLU F:36 , LYS F:37 , LYS F:38 , TYR F:39 , ALA F:41 , THR F:42 , ALA F:67 , GLY F:68 , ASN F:122 , LYS F:123 , ASP F:125 , ILE F:126 , SER F:150 , ALA F:151 , LYS F:152 , MG F:218 , HOH F:359
BINDING SITE FOR RESIDUE GTP F 217
7
AC7
SOFTWARE
THR F:24 , THR F:42 , ASP F:65 , THR F:66 , GTP F:217
BINDING SITE FOR RESIDUE MG F 218
[
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]
SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_051900 (R95I, chain C/F, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_051900
R
95
I
RAN_HUMAN
Polymorphism
11546488
C/F
R
95
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: IBB (B:11-71,E:11-73)
2: IMPORTIN_B_NT (A:46-112,D:46-112)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IBB
PS51214
IBB domain profile.
SPN1_HUMAN
11-73
2
B:11-71
E:11-73
2
IMPORTIN_B_NT
PS50166
Importin-beta N-terminal domain profile.
XPO1_MOUSE
46-112
2
A:46-112
D:46-112
[
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]
Exons
(13, 26)
Info
All Exons
Exon 1.3b (B:1-53 (gaps) | E:1-53 (gaps))
Exon 1.4 (B:53-101 (gaps) | E:53-101 (gaps))
Exon 1.5 (B:102-136 | E:102-136)
Exon 1.6 (B:137-168 (gaps) | E:137-168 (gaps...)
Exon 1.7 (B:168-200 | E:168-200)
Exon 1.8 (B:201-226 | E:201-226)
Exon 1.9 (B:227-253 | E:227-253)
Exon 1.10 (B:254-360 (gaps) | E:254-360 (gaps...)
Exon 2.2a (C:9-32 | F:9-32)
Exon 2.2d (C:33-61 | F:33-61)
Exon 2.3 (C:61-103 | F:61-103)
Exon 2.5b (C:103-165 | F:103-165)
Exon 2.6c (C:166-179 | F:166-179)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.1b/1.3b
02: Boundary 1.3b/1.4
03: Boundary 1.4/1.5
04: Boundary 1.5/1.6
05: Boundary 1.6/1.7
06: Boundary 1.7/1.8
07: Boundary 1.8/1.9
08: Boundary 1.9/1.10
09: Boundary 1.10/-
10: Boundary -/2.2a
11: Boundary 2.2a/2.2d
12: Boundary 2.2d/2.3
13: Boundary 2.3/2.5b
14: Boundary 2.5b/2.6c
15: Boundary 2.6c/2.7c
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000308588
1b
ENSE00001328747
chr15:
75918156-75918007
150
SPN1_HUMAN
-
0
0
-
-
1.3b
ENST00000308588
3b
ENSE00001690493
chr15:
75913397-75913235
163
SPN1_HUMAN
1-53
53
2
B:1-53 (gaps)
E:1-53 (gaps)
53
53
1.4
ENST00000308588
4
ENSE00001208446
chr15:
75909893-75909749
145
SPN1_HUMAN
53-101
49
2
B:53-101 (gaps)
E:53-101 (gaps)
49
49
1.5
ENST00000308588
5
ENSE00001295612
chr15:
75902335-75902231
105
SPN1_HUMAN
102-136
35
2
B:102-136
E:102-136
35
35
1.6
ENST00000308588
6
ENSE00001310397
chr15:
75901992-75901899
94
SPN1_HUMAN
137-168
32
2
B:137-168 (gaps)
E:137-168 (gaps)
32
32
1.7
ENST00000308588
7
ENSE00001311880
chr15:
75899654-75899557
98
SPN1_HUMAN
168-200
33
2
B:168-200
E:168-200
33
33
1.8
ENST00000308588
8
ENSE00001208428
chr15:
75897568-75897491
78
SPN1_HUMAN
201-226
26
2
B:201-226
E:201-226
26
26
1.9
ENST00000308588
9
ENSE00001161530
chr15:
75893559-75893479
81
SPN1_HUMAN
227-253
27
2
B:227-253
E:227-253
27
27
1.10
ENST00000308588
10
ENSE00001295764
chr15:
75891022-75890424
599
SPN1_HUMAN
254-360
107
2
B:254-360 (gaps)
E:254-360 (gaps)
107
107
2.2a
ENST00000392369
2a
ENSE00001511608
chr12:
131356783-131357174
392
RAN_HUMAN
1-32
32
2
C:9-32
F:9-32
24
24
2.2d
ENST00000392369
2d
ENSE00000903701
chr12:
131357381-131357465
85
RAN_HUMAN
33-61
29
2
C:33-61
F:33-61
29
29
2.3
ENST00000392369
3
ENSE00000903703
chr12:
131357548-131357673
126
RAN_HUMAN
61-103
43
2
C:61-103
F:61-103
43
43
2.5b
ENST00000392369
5b
ENSE00000903705
chr12:
131359091-131359278
188
RAN_HUMAN
103-165
63
2
C:103-165
F:103-165
63
63
2.6c
ENST00000392369
6c
ENSE00000903707
chr12:
131360157-131360327
171
RAN_HUMAN
166-222
57
2
C:166-179
F:166-179
14
14
2.7c
ENST00000392369
7c
ENSE00001511600
chr12:
131360427-131360826
400
RAN_HUMAN
223-236
14
0
-
-
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3gjxc_ (C:)
1b: SCOP_d3gjxf_ (F:)
View:
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Label:
Classes
(
)
(
)
Folds
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)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
Ran
(37)
Human (Homo sapiens) [TaxId: 9606]
(29)
1a
d3gjxc_
C:
1b
d3gjxf_
F:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3gjxC00 (C:9-179)
1b: CATH_3gjxF00 (F:9-179)
View:
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Classes
(
)
(
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Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
3gjxC00
C:9-179
1b
3gjxF00
F:9-179
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
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Atom Selection
(currently selected atoms:
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Hetero
Ligand
Solvent
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
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Chain B
Chain C
Chain D
Chain E
Chain F
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Asym.Unit (1.0 MB)
Header - Asym.Unit
Biol.Unit 1 (515 KB)
Header - Biol.Unit 1
Biol.Unit 2 (521 KB)
Header - Biol.Unit 2
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