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3GJ0
Asym. Unit
Info
Asym.Unit (159 KB)
Biol.Unit 1 (81 KB)
Biol.Unit 2 (76 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN RANGDP
Authors
:
J. R. Partridge, T. U. Schwartz
Date
:
07 Mar 09 (Deposition) - 04 Aug 09 (Release) - 04 Aug 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.48
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
G Protein, Gdp, Acetylation, Cytoplasm, Gtp-Binding, Host- Virus Interaction, Nucleotide-Binding, Nucleus, Phosphoprotein, Polymorphism, Protein Transport, Transport, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. R. Partridge, T. U. Schwartz
Crystallographic And Biochemical Analysis Of The Ran-Binding Zinc Finger Domain.
J. Mol. Biol. V. 391 375 2009
(for further references see the
PDB file header
)
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
1b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GDP
2
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
2
MG
2
Ligand/Ion
MAGNESIUM ION
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:24 , HOH A:218 , HOH A:220 , HOH A:228 , HOH A:233 , GDP A:302
BINDING SITE FOR RESIDUE MG A 301
2
AC2
SOFTWARE
GLY A:20 , THR A:21 , GLY A:22 , LYS A:23 , THR A:24 , THR A:25 , ASN A:122 , LYS A:123 , ASP A:125 , ILE A:126 , SER A:150 , ALA A:151 , LYS A:152 , HOH A:218 , HOH A:220 , HOH A:247 , HOH A:277 , MG A:301 , HOH A:329 , HOH A:345 , HOH A:439 , HOH A:463
BINDING SITE FOR RESIDUE GDP A 302
3
AC3
SOFTWARE
THR B:24 , GDP B:217 , HOH B:219 , HOH B:221 , HOH B:222 , HOH B:223
BINDING SITE FOR RESIDUE MG B 301
4
AC4
SOFTWARE
GLY B:20 , THR B:21 , GLY B:22 , LYS B:23 , THR B:24 , THR B:25 , ASN B:122 , LYS B:123 , ASP B:125 , ILE B:126 , SER B:150 , ALA B:151 , LYS B:152 , ASN B:173 , HOH B:222 , HOH B:223 , HOH B:251 , HOH B:295 , MG B:301 , HOH B:354 , HOH B:403 , HOH B:424 , HOH B:500 , HOH B:501
BINDING SITE FOR RESIDUE GDP B 217
[
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_051900 (R95I, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_051900
R
95
I
RAN_HUMAN
Polymorphism
11546488
A/B
R
95
I
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RAN (A:4-168)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RAN
PS51418
small GTPase Ran family profile.
RAN_HUMAN
4-168
1
A:4-168
[
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Exons
(5, 10)
Info
All Exons
Exon 1.2a (A:1-32 | B:8-32)
Exon 1.2d (A:33-61 | B:33-61)
Exon 1.3 (A:61-103 | B:61-103 (gaps))
Exon 1.5b (A:103-165 | B:103-165)
Exon 1.6c (A:166-207 | B:166-206)
View:
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All Exon Boundaries
1: Boundary -/1.2a
2: Boundary 1.2a/1.2d
3: Boundary 1.2d/1.3
4: Boundary 1.3/1.5b
5: Boundary 1.5b/1.6c
6: Boundary 1.6c/1.7c
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000392369
2a
ENSE00001511608
chr12:
131356783-131357174
392
RAN_HUMAN
1-32
32
2
A:1-32
B:8-32
32
25
1.2d
ENST00000392369
2d
ENSE00000903701
chr12:
131357381-131357465
85
RAN_HUMAN
33-61
29
2
A:33-61
B:33-61
29
29
1.3
ENST00000392369
3
ENSE00000903703
chr12:
131357548-131357673
126
RAN_HUMAN
61-103
43
2
A:61-103
B:61-103 (gaps)
43
43
1.5b
ENST00000392369
5b
ENSE00000903705
chr12:
131359091-131359278
188
RAN_HUMAN
103-165
63
2
A:103-165
B:103-165
63
63
1.6c
ENST00000392369
6c
ENSE00000903707
chr12:
131360157-131360327
171
RAN_HUMAN
166-222
57
2
A:166-207
B:166-206
42
41
1.7c
ENST00000392369
7c
ENSE00001511600
chr12:
131360427-131360826
400
RAN_HUMAN
223-236
14
0
-
-
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3gj0a_ (A:)
1b: SCOP_d3gj0b_ (B:)
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)
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(
)
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)
Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
automated matches
(173)
Human (Homo sapiens) [TaxId: 9606]
(112)
1a
d3gj0a_
A:
1b
d3gj0b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3gj0A00 (A:1-207)
1b: CATH_3gj0B00 (B:8-206)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
3gj0A00
A:1-207
1b
3gj0B00
B:8-206
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (159 KB)
Header - Asym.Unit
Biol.Unit 1 (81 KB)
Header - Biol.Unit 1
Biol.Unit 2 (76 KB)
Header - Biol.Unit 2
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