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Getting 'Exon' information from database.
3GHN
Asym. Unit
Info
Asym.Unit (68 KB)
Biol.Unit 1 (63 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE EXOSITE-CONTAINING FRAGMENT OF HUMAN ADAMTS13 (FORM-2)
Authors
:
M. Akiyama, S. Takeda, K. Kokame, J. Takagi, T. Miyata
Date
:
04 Mar 09 (Deposition) - 27 Oct 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Thrombospondin Type-1 Motif, Beta Sandwich, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Akiyama, S. Takeda, K. Kokame, J. Takagi, T. Miyata
Crystal Structures Of The Non-Catalytic Domains Of Adamts13 Reveal Multiple Discontinuous Exosites For Von Willebrand Factor
To Be Published
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(4, 6)
Info
All Hetero Components
1a: BETA-D-GLUCOSE (BGCa)
2a: ALPHA-L-FUCOSE (FUCa)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
4b: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BGC
1
Ligand/Ion
BETA-D-GLUCOSE
2
FUC
1
Ligand/Ion
ALPHA-L-FUCOSE
3
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
NDG
2
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
[
close Hetero Component info
]
Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:31 , ARG A:544 , ASP A:551 , ASN A:552
BINDING SITE FOR RESIDUE NDG A 900
2
AC2
SOFTWARE
HOH A:8 , HOH A:9 , HOH A:42 , GLU A:363 , GLY A:419 , ASN A:614 , NAG A:902
BINDING SITE FOR RESIDUE NAG A 901
3
AC3
SOFTWARE
GLY A:419 , GLY A:420 , ARG A:421 , ALA A:631 , ARG A:639 , NAG A:901
BINDING SITE FOR RESIDUE NAG A 902
4
AC4
SOFTWARE
GLU A:439 , LYS A:440 , ASN A:579
BINDING SITE FOR RESIDUE NDG A 903
5
AC5
SOFTWARE
SER A:399 , CYS A:400 , THR A:575 , BGC A:906
BINDING SITE FOR RESIDUE FUC A 905
6
AC6
SOFTWARE
HOH A:7 , ARG A:398 , CYS A:400 , CYS A:438 , LYS A:440 , PHE A:445 , GLN A:448 , FUC A:905
BINDING SITE FOR RESIDUE BGC A 906
[
close Site info
]
SAPs(SNPs)/Variants
(23, 23)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_067777 (Y304C, chain A, )
02: VAR_067778 (C311Y, chain A, )
03: VAR_067779 (T339R, chain A, )
04: VAR_067780 (C347S, chain A, )
05: VAR_067781 (R349C, chain A, )
06: VAR_067782 (P353L, chain A, )
07: VAR_027118 (W390C, chain A, )
08: VAR_027119 (R398H, chain A, )
09: VAR_027120 (Q448E, chain A, )
10: VAR_027162 (Q456H, chain A, )
11: VAR_027163 (P457L, chain A, )
12: VAR_027121 (P475S, chain A, )
13: VAR_067783 (R507Q, chain A, )
14: VAR_027122 (C508Y, chain A, )
15: VAR_067784 (G525D, chain A, )
16: VAR_027123 (R528G, chain A, )
17: VAR_067785 (A596V, chain A, )
18: VAR_067786 (A606P, chain A, )
19: VAR_027124 (P618A, chain A, )
20: VAR_027125 (R625H, chain A, )
21: VAR_067787 (Y658C, chain A, )
22: VAR_067788 (P671L, chain A, )
23: VAR_027126 (I673F, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_067777
Y
304
C
ATS13_HUMAN
Disease (TTP)
281875285
A
Y
304
C
02
UniProt
VAR_067778
C
311
Y
ATS13_HUMAN
Disease (TTP)
281875336
A
C
311
Y
03
UniProt
VAR_067779
T
339
R
ATS13_HUMAN
Polymorphism
149517360
A
T
339
R
04
UniProt
VAR_067780
C
347
S
ATS13_HUMAN
Disease (TTP)
281875294
A
C
347
S
05
UniProt
VAR_067781
R
349
C
ATS13_HUMAN
Disease (TTP)
281875288
A
R
349
C
06
UniProt
VAR_067782
P
353
L
ATS13_HUMAN
Disease (TTP)
281875338
A
P
353
L
07
UniProt
VAR_027118
W
390
C
ATS13_HUMAN
Disease (TTP)
281875306
A
W
390
C
08
UniProt
VAR_027119
R
398
H
ATS13_HUMAN
Disease (TTP)
121908471
A
R
398
H
09
UniProt
VAR_027120
Q
448
E
ATS13_HUMAN
Polymorphism
2301612
A
Q
448
E
10
UniProt
VAR_027162
Q
456
H
ATS13_HUMAN
Polymorphism
36220239
A
Q
456
H
11
UniProt
VAR_027163
P
457
L
ATS13_HUMAN
Polymorphism
36220240
A
P
457
L
12
UniProt
VAR_027121
P
475
S
ATS13_HUMAN
Polymorphism
11575933
A
P
475
S
13
UniProt
VAR_067783
R
507
Q
ATS13_HUMAN
Disease (TTP)
281875296
A
R
507
Q
14
UniProt
VAR_027122
C
508
Y
ATS13_HUMAN
Disease (TTP)
281875305
A
C
508
Y
15
UniProt
VAR_067784
G
525
D
ATS13_HUMAN
Disease (TTP)
281875286
A
G
525
D
16
UniProt
VAR_027123
R
528
G
ATS13_HUMAN
Disease (TTP)
121908473
A
R
528
G
17
UniProt
VAR_067785
A
596
V
ATS13_HUMAN
Disease (TTP)
281875299
A
A
596
V
18
UniProt
VAR_067786
A
606
P
ATS13_HUMAN
Disease (TTP)
281875290
A
A
606
P
19
UniProt
VAR_027124
P
618
A
ATS13_HUMAN
Polymorphism
28647808
A
P
618
A
20
UniProt
VAR_027125
R
625
H
ATS13_HUMAN
Polymorphism
36090624
A
R
625
H
21
UniProt
VAR_067787
Y
658
C
ATS13_HUMAN
Disease (TTP)
281875335
A
Y
658
C
22
UniProt
VAR_067788
P
671
L
ATS13_HUMAN
Disease (TTP)
281875295
A
P
671
L
23
UniProt
VAR_027126
I
673
F
ATS13_HUMAN
Disease (TTP)
281875307
A
I
673
F
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: TSP1 (A:384-439|-|-|-)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TSP1
PS50092
Thrombospondin type-1 (TSP1) repeat profile.
ATS13_HUMAN
384-439
742-805
1072-1131
1012-1068
1
A:384-439
-
-
-
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (68 KB)
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