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Getting 'Hetero Component' information from database.
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3GHG
Asym. Unit
Info
Asym.Unit (671 KB)
Biol.Unit 1 (328 KB)
Biol.Unit 2 (330 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN FIBRINOGEN
Authors
:
R. F. Doolittle, J. M. Kollman, M. R. Sawaya, L. Pandi, M. Riley
Date
:
03 Mar 09 (Deposition) - 19 May 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T
Biol. Unit 1: A,B,C,D,E,F,M,N,O,P (1x)
Biol. Unit 2: G,H,I,J,K,L,Q,R,S,T (1x)
Keywords
:
Triple-Stranded Coiled Coil, Beta Sheets, Alpha Helices, Amyloid, Amyloidosis, Blood Coagulation, Disease Mutation, Glycoprotein, Phosphoprotein, Secreted, Pyrrolidone Carboxylic Acid, Sulfation, Blood Clotting
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. M. Kollman, L. Pandi, M. R. Sawaya, M. Riley, R. F. Doolittle
Crystal Structure Of Human Fibrinogen.
Biochemistry V. 48 3877 2009
[
close entry info
]
Hetero Components
(7, 48)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
2g: CALCIUM ION (CAg)
2h: CALCIUM ION (CAh)
3a: BETA-D-GALACTOSE (GALa)
3b: BETA-D-GALACTOSE (GALb)
3c: BETA-D-GALACTOSE (GALc)
3d: BETA-D-GALACTOSE (GALd)
3e: BETA-D-GALACTOSE (GALe)
3f: BETA-D-GALACTOSE (GALf)
4a: ALPHA-D-MANNOSE (MANa)
4b: ALPHA-D-MANNOSE (MANb)
4c: ALPHA-D-MANNOSE (MANc)
4d: ALPHA-D-MANNOSE (MANd)
4e: ALPHA-D-MANNOSE (MANe)
4f: ALPHA-D-MANNOSE (MANf)
4g: ALPHA-D-MANNOSE (MANg)
4h: ALPHA-D-MANNOSE (MANh)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5f: N-ACETYL-D-GLUCOSAMINE (NAGf)
6a: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGa)
6b: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGb)
6c: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGc)
6d: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGd)
6e: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGe)
6f: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGf)
6g: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGg)
6h: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGh)
6i: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGi)
6j: 2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOP... (NDGj)
7a: O-SIALIC ACID (SIAa)
7b: O-SIALIC ACID (SIAb)
7c: O-SIALIC ACID (SIAc)
7d: O-SIALIC ACID (SIAd)
7e: O-SIALIC ACID (SIAe)
7f: O-SIALIC ACID (SIAf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
4
Ligand/Ion
BETA-D-MANNOSE
2
CA
8
Ligand/Ion
CALCIUM ION
3
GAL
6
Ligand/Ion
BETA-D-GALACTOSE
4
MAN
8
Ligand/Ion
ALPHA-D-MANNOSE
5
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
6
NDG
10
Ligand/Ion
2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
7
SIA
6
Ligand/Ion
O-SIALIC ACID
[
close Hetero Component info
]
Sites
(48, 48)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
MET B:361 , ASN B:364 , NDG B:471 , HIS O:2
BINDING SITE FOR RESIDUE NAG B 470
02
AC2
SOFTWARE
NAG B:470 , BMA B:472 , MAN B:474 , NDG B:477
BINDING SITE FOR RESIDUE NDG B 471
03
AC3
SOFTWARE
NDG B:471 , MAN B:473 , MAN B:474 , NDG B:477
BINDING SITE FOR RESIDUE BMA B 472
04
AC4
SOFTWARE
BMA B:472 , NDG B:475 , GAL B:476
BINDING SITE FOR RESIDUE MAN B 473
05
AC5
SOFTWARE
MAN B:473 , GAL B:476
BINDING SITE FOR RESIDUE NDG B 475
06
AC6
SOFTWARE
NDG B:471 , BMA B:472 , NDG B:477
BINDING SITE FOR RESIDUE MAN B 474
07
AC7
SOFTWARE
NDG B:471 , BMA B:472 , MAN B:474 , GAL B:478 , SIA B:479
BINDING SITE FOR RESIDUE NDG B 477
08
AC8
SOFTWARE
MAN B:473 , NDG B:475 , SIA B:480
BINDING SITE FOR RESIDUE GAL B 476
09
AC9
SOFTWARE
NDG B:477 , GAL B:478
BINDING SITE FOR RESIDUE SIA B 479
10
BC1
SOFTWARE
NDG B:477 , SIA B:479
BINDING SITE FOR RESIDUE GAL B 478
11
BC2
SOFTWARE
GAL B:476
BINDING SITE FOR RESIDUE SIA B 480
12
BC3
SOFTWARE
MET E:361 , GLU E:363 , ASN E:364 , NDG E:471 , HIS P:2 , PRO P:4
BINDING SITE FOR RESIDUE NAG E 470
13
BC4
SOFTWARE
NAG E:470 , BMA E:472 , NDG E:477
BINDING SITE FOR RESIDUE NDG E 471
14
BC5
SOFTWARE
NDG E:471 , MAN E:473 , MAN E:474 , NDG E:477
BINDING SITE FOR RESIDUE BMA E 472
15
BC6
SOFTWARE
BMA E:472 , NDG E:475 , GAL E:476
BINDING SITE FOR RESIDUE MAN E 473
16
BC7
SOFTWARE
MAN E:473 , GAL E:476
BINDING SITE FOR RESIDUE NDG E 475
17
BC8
SOFTWARE
BMA E:472 , NDG E:477
BINDING SITE FOR RESIDUE MAN E 474
18
BC9
SOFTWARE
NDG E:471 , BMA E:472 , MAN E:474 , GAL E:478
BINDING SITE FOR RESIDUE NDG E 477
19
CC1
SOFTWARE
MAN E:473 , NDG E:475 , SIA E:480
BINDING SITE FOR RESIDUE GAL E 476
20
CC2
SOFTWARE
TRP E:424 , GAL E:478
BINDING SITE FOR RESIDUE SIA E 479
21
CC3
SOFTWARE
NDG E:477 , SIA E:479
BINDING SITE FOR RESIDUE GAL E 478
22
CC4
SOFTWARE
GAL E:476 , LYS G:81
BINDING SITE FOR RESIDUE SIA E 480
23
CC5
SOFTWARE
MET H:361 , ASN H:364 , NDG H:471 , HIS S:2 , PRO S:4
BINDING SITE FOR RESIDUE NAG H 470
24
CC6
SOFTWARE
NAG H:470 , BMA H:472 , MAN H:474
BINDING SITE FOR RESIDUE NDG H 471
25
CC7
SOFTWARE
NDG H:471 , MAN H:473 , MAN H:474
BINDING SITE FOR RESIDUE BMA H 472
26
CC8
SOFTWARE
BMA H:472
BINDING SITE FOR RESIDUE MAN H 473
27
CC9
SOFTWARE
NDG H:471 , BMA H:472
BINDING SITE FOR RESIDUE MAN H 474
28
DC1
SOFTWARE
MET K:361 , ASN K:364 , NDG K:471 , HIS T:2 , PRO T:4
BINDING SITE FOR RESIDUE NAG K 470
29
DC2
SOFTWARE
NAG K:470 , BMA K:472 , MAN K:474 , NDG K:477
BINDING SITE FOR RESIDUE NDG K 471
30
DC3
SOFTWARE
NDG K:471 , MAN K:473 , MAN K:474 , NDG K:477
BINDING SITE FOR RESIDUE BMA K 472
31
DC4
SOFTWARE
BMA K:472 , NDG K:475 , GAL K:476
BINDING SITE FOR RESIDUE MAN K 473
32
DC5
SOFTWARE
MAN K:473 , GAL K:476
BINDING SITE FOR RESIDUE NDG K 475
33
DC6
SOFTWARE
NDG K:471 , BMA K:472 , NDG K:477
BINDING SITE FOR RESIDUE MAN K 474
34
DC7
SOFTWARE
NDG K:471 , BMA K:472 , MAN K:474 , GAL K:478 , SIA K:479
BINDING SITE FOR RESIDUE NDG K 477
35
DC8
SOFTWARE
MAN K:473 , NDG K:475 , SIA K:480
BINDING SITE FOR RESIDUE GAL K 476
36
DC9
SOFTWARE
TRP K:424 , NDG K:477 , GAL K:478
BINDING SITE FOR RESIDUE SIA K 479
37
EC1
SOFTWARE
NDG K:477 , SIA K:479
BINDING SITE FOR RESIDUE GAL K 478
38
EC2
SOFTWARE
GAL K:476
BINDING SITE FOR RESIDUE SIA K 480
39
EC3
SOFTWARE
GLN L:49 , ASN L:52 , LYS L:53 , GLU L:56 , NAG L:571
BINDING SITE FOR RESIDUE NAG L 570
40
EC4
SOFTWARE
GLU L:56 , NAG L:570
BINDING SITE FOR RESIDUE NAG L 571
41
EC5
SOFTWARE
ASP B:381 , ASP B:383 , TRP B:385
BINDING SITE FOR RESIDUE CA B 501
42
EC6
SOFTWARE
ASP C:318 , ASP C:320 , PHE C:322 , GLY C:324
BINDING SITE FOR RESIDUE CA C 601
43
EC7
SOFTWARE
ASP E:381 , ASP E:383 , TRP E:385 , LEU E:386
BINDING SITE FOR RESIDUE CA E 501
44
EC8
SOFTWARE
ASP F:318 , ASP F:320 , PHE F:322 , GLU F:323 , GLY F:324
BINDING SITE FOR RESIDUE CA F 601
45
EC9
SOFTWARE
ASP H:381 , ASP H:383 , TRP H:385
BINDING SITE FOR RESIDUE CA H 501
46
FC1
SOFTWARE
ASP I:318 , ASP I:320 , PHE I:322 , GLY I:324
BINDING SITE FOR RESIDUE CA I 601
47
FC2
SOFTWARE
ASP K:381 , ASP K:383 , TRP K:385
BINDING SITE FOR RESIDUE CA K 501
48
FC3
SOFTWARE
ASP L:318 , ASP L:320 , PHE L:322 , GLY L:324
BINDING SITE FOR RESIDUE CA L 601
[
close Site info
]
SAPs(SNPs)/Variants
(39, 156)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_072721 (C36R, chain A/D/G/J, )
02: VAR_002398 (S47T, chain A/D/G/J, )
03: VAR_049066 (E51G, chain C/F/I/L, )
04: VAR_072724 (C65R, chain B/E/H/K, )
05: VAR_002406 (A68T, chain B/E/H/K, )
06: VAR_013091 (P70S, chain B/E/H/K, )
07: VAR_072722 (R110P, chain A/D/G/J, )
08: VAR_033930 (Y114H, chain C/F/I/L, )
09: VAR_013092 (N140H, chain B/E/H/K, )
10: VAR_002399 (R141S, chain A/D/G/J, )
11: VAR_014170 (G165R, chain C/F/I/L, )
12: VAR_072723 (C165W, chain A/D/G/J, )
13: VAR_016908 (R166C, chain B/E/H/K, )
14: VAR_072620 (L172Q, chain B/E/H/K, )
15: VAR_013093 (P235L, chain B/E/H/K, )
16: VAR_002409 (R275C, chain C/F/I/L, )
17: VAR_002410 (R275H, chain C/F/I/L, )
18: VAR_072726 (T277P, chain C/F/I/L, )
19: VAR_002411 (G292V, chain C/F/I/L, )
20: VAR_072727 (D301H, chain C/F/I/L, )
21: VAR_002413 (N308I, chain C/F/I/L, )
22: VAR_002412 (N308K, chain C/F/I/L, )
23: VAR_015853 (G309D, chain C/F/I/L, )
24: VAR_002414 (M310T, chain C/F/I/L, )
25: VAR_072728 (N319D, chain C/F/I/L, )
26: VAR_002416 (Q329R, chain C/F/I/L, )
27: VAR_002418 (D330V, chain C/F/I/L, )
28: VAR_002417 (D330Y, chain C/F/I/L, )
29: VAR_002407 (A335T, chain B/E/H/K, )
30: VAR_002419 (N337K, chain C/F/I/L, )
31: VAR_016909 (L353R, chain B/E/H/K, )
32: VAR_002421 (S358C, chain C/F/I/L, )
33: VAR_002422 (R375G, chain C/F/I/L, )
34: VAR_072729 (R375W, chain C/F/I/L, )
35: VAR_072725 (T377K, chain B/E/H/K, )
36: VAR_072621 (S378P, chain C/F/I/L, )
37: VAR_014171 (M384V, chain C/F/I/L, )
38: VAR_016910 (G400D, chain B/E/H/K, )
39: VAR_002408 (R448K, chain B/E/H/K, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_072721
C
55
R
FIBA_HUMAN
Disease (CAFBN)
---
A/D/G/J
C
36
R
02
UniProt
VAR_002398
S
66
T
FIBA_HUMAN
Polymorphism
---
A/D/G/J
S
47
T
03
UniProt
VAR_049066
E
77
G
FIBG_HUMAN
Polymorphism
11551835
C/F/I/L
E
51
G
04
UniProt
VAR_072724
C
95
R
FIBB_HUMAN
Disease (CAFBN)
---
B/E/H/K
C
65
R
05
UniProt
VAR_002406
A
98
T
FIBB_HUMAN
Disease (DYSFIBRIN)
---
B/E/H/K
A
68
T
06
UniProt
VAR_013091
P
100
S
FIBB_HUMAN
Polymorphism
2227434
B/E/H/K
P
70
S
07
UniProt
VAR_072722
R
129
P
FIBA_HUMAN
Disease (CAFBN)
---
A/D/G/J
R
110
P
08
UniProt
VAR_033930
Y
140
H
FIBG_HUMAN
Polymorphism
2066870
C/F/I/L
Y
114
H
09
UniProt
VAR_013092
N
170
H
FIBB_HUMAN
Polymorphism
2227409
B/E/H/K
N
140
H
10
UniProt
VAR_002399
R
160
S
FIBA_HUMAN
Unclassified
---
A/D/G/J
R
141
S
11
UniProt
VAR_014170
G
191
R
FIBG_HUMAN
Polymorphism
6063
C/F/I/L
G
165
R
12
UniProt
VAR_072723
C
184
W
FIBA_HUMAN
Disease (CAFBN)
---
A/D/G/J
C
165
W
13
UniProt
VAR_016908
R
196
C
FIBB_HUMAN
Disease (CAFBN)
---
B/E/H/K
R
166
C
14
UniProt
VAR_072620
L
202
Q
FIBB_HUMAN
Disease (CAFBN)
---
B/E/H/K
L
172
Q
15
UniProt
VAR_013093
P
265
L
FIBB_HUMAN
Polymorphism
6054
B/E/H/K
P
235
L
16
UniProt
VAR_002409
R
301
C
FIBG_HUMAN
Unclassified
---
C/F/I/L
R
275
C
17
UniProt
VAR_002410
R
301
H
FIBG_HUMAN
Disease (DYSFIBRIN)
---
C/F/I/L
R
275
H
18
UniProt
VAR_072726
T
303
P
FIBG_HUMAN
Disease (CAFBN)
---
C/F/I/L
T
277
P
19
UniProt
VAR_002411
G
318
V
FIBG_HUMAN
Disease (DYSFIBRIN)
---
C/F/I/L
G
292
V
20
UniProt
VAR_072727
D
327
H
FIBG_HUMAN
Disease (CAFBN)
---
C/F/I/L
D
301
H
21
UniProt
VAR_002413
N
334
I
FIBG_HUMAN
Polymorphism
121913090
C/F/I/L
N
308
I
22
UniProt
VAR_002412
N
334
K
FIBG_HUMAN
Unclassified
---
C/F/I/L
N
308
K
23
UniProt
VAR_015853
G
335
D
FIBG_HUMAN
Unclassified
---
C/F/I/L
G
309
D
24
UniProt
VAR_002414
M
336
T
FIBG_HUMAN
Unclassified
---
C/F/I/L
M
310
T
25
UniProt
VAR_072728
N
345
D
FIBG_HUMAN
Disease (CAFBN)
---
C/F/I/L
N
319
D
26
UniProt
VAR_002416
Q
355
R
FIBG_HUMAN
Unclassified
---
C/F/I/L
Q
329
R
27
UniProt
VAR_002418
D
356
V
FIBG_HUMAN
Disease (DYSFIBRIN)
---
C/F/I/L
D
330
V
28
UniProt
VAR_002417
D
356
Y
FIBG_HUMAN
Unclassified
---
C/F/I/L
D
330
Y
29
UniProt
VAR_002407
A
365
T
FIBB_HUMAN
Unclassified
---
B/E/H/K
A
335
T
30
UniProt
VAR_002419
N
363
K
FIBG_HUMAN
Unclassified
---
C/F/I/L
N
337
K
31
UniProt
VAR_016909
L
383
R
FIBB_HUMAN
Disease (CAFBN)
---
B/E/H/K
L
353
R
32
UniProt
VAR_002421
S
384
C
FIBG_HUMAN
Unclassified
---
C/F/I/L
S
358
C
33
UniProt
VAR_002422
R
401
G
FIBG_HUMAN
Unclassified
---
C/F/I/L
R
375
G
34
UniProt
VAR_072729
R
401
W
FIBG_HUMAN
Disease (CAFBN)
---
C/F/I/L
R
375
W
35
UniProt
VAR_072725
T
407
K
FIBB_HUMAN
Disease (CAFBN)
---
B/E/H/K
T
377
K
36
UniProt
VAR_072621
S
404
P
FIBG_HUMAN
Disease (DYSFIBRIN)
---
C/F/I/L
S
378
P
37
UniProt
VAR_014171
M
410
V
FIBG_HUMAN
Polymorphism
6061
C/F/I/L
M
384
V
38
UniProt
VAR_016910
G
430
D
FIBB_HUMAN
Disease (CAFBN)
---
B/E/H/K
G
400
D
39
UniProt
VAR_002408
R
478
K
FIBB_HUMAN
Polymorphism
4220
B/E/H/K
R
448
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 16)
Info
All PROSITE Patterns/Profiles
1: FIBRINOGEN_C_2 (C:144-390,F:144-390,I:144-390,L:14...)
2: FIBRINOGEN_C_1 (C:334-346,F:334-346,I:334-346,L:33...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FIBRINOGEN_C_2
PS51406
Fibrinogen C-terminal domain profile.
FIBG_HUMAN
170-416
4
C:144-390
F:144-390
I:144-390
L:144-390
FIBB_HUMAN
232-488
4
B:202-458
E:202-458
H:202-458
K:202-458
2
FIBRINOGEN_C_1
PS00514
Fibrinogen C-terminal domain signature.
FIBG_HUMAN
360-372
4
C:334-346
F:334-346
I:334-346
L:334-346
FIBB_HUMAN
432-444
4
B:402-414
E:402-414
H:402-414
K:402-414
[
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Exons
(19, 76)
Info
All Exons
Exon 1.2 (A:27-41 | D:27-41 | G:27-41 | J:27...)
Exon 1.3 (A:42-103 | D:42-103 | G:42-103 | J...)
Exon 1.4b (A:103-151 | D:103-151 | G:103-151 ...)
Exon 1.5b (A:152-200 | D:152-200 | G:152-200 ...)
Exon 2.2d (B:58-72 | E:58-72 | H:58-72 | K:58...)
Exon 2.3b (B:73-134 | E:73-134 | H:73-134 | K...)
Exon 2.4b (B:134-210 | E:134-210 | H:134-210 ...)
Exon 2.5 (B:210-248 | E:210-248 | H:210-248 ...)
Exon 2.6 (B:248-290 | E:248-290 | H:248-290 ...)
Exon 2.7 (B:290-385 | E:290-385 | H:290-385 ...)
Exon 2.8c (B:385-458 | E:385-458 | H:385-458 ...)
Exon 3.2a (C:14-15 | F:14-15 | I:2-15 | L:5-1...)
Exon 3.2d (C:16-77 | F:16-77 | I:16-77 | L:16...)
Exon 3.2g (C:77-108 | F:77-108 | I:77-108 | L...)
Exon 3.3a (C:108-152 | F:108-152 | I:108-152 ...)
Exon 3.3f (C:152-196 | F:152-196 | I:152-196 ...)
Exon 3.4b (C:197-258 | F:197-258 | I:197-258 ...)
Exon 3.5 (C:258-351 | F:258-351 | I:258-351 ...)
Exon 3.6c (C:351-394 | F:351-395 | I:351-395 ...)
View:
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All Exon Boundaries
01: Boundary 1.1a/1.2
02: Boundary 1.2/1.3
03: Boundary 1.3/1.4b
04: Boundary 1.4b/1.5b
05: Boundary 1.5b/1.6
06: Boundary 2.1a/2.2d
07: Boundary 2.2d/2.3b
08: Boundary 2.3b/2.4b
09: Boundary 2.4b/2.5
10: Boundary 2.5/2.6
11: Boundary 2.6/2.7
12: Boundary 2.7/2.8c
13: Boundary 2.8c/-
14: Boundary 3.1f/3.2a
15: Boundary 3.2a/3.2d
16: Boundary 3.2d/3.2g
17: Boundary 3.2g/3.3a
18: Boundary 3.3a/3.3f
19: Boundary 3.3f/3.4b
20: Boundary 3.4b/3.5
21: Boundary 3.5/3.6c
22: Boundary 3.6c/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000302053
1a
ENSE00001909776
chr4:
155511918-155511786
133
FIBA_HUMAN
1-18
18
0
-
-
1.2
ENST00000302053
2
ENSE00001127292
chr4:
155510714-155510589
126
FIBA_HUMAN
19-60
42
4
A:27-41
D:27-41
G:27-41
J:27-41
15
15
15
15
1.3
ENST00000302053
3
ENSE00001127283
chr4:
155510128-155509945
184
FIBA_HUMAN
61-122
62
4
A:42-103
D:42-103
G:42-103
J:42-103
62
62
62
62
1.4b
ENST00000302053
4b
ENSE00001127274
chr4:
155508809-155508664
146
FIBA_HUMAN
122-170
49
4
A:103-151
D:103-151
G:103-151
J:103-151
49
49
49
49
1.5b
ENST00000302053
5b
ENSE00001127263
chr4:
155508070-155506690
1381
FIBA_HUMAN
171-631
461
4
A:152-200
D:152-200
G:152-200
J:152-212
49
49
49
61
1.6
ENST00000302053
6
ENSE00001210975
chr4:
155505985-155504278
1708
FIBA_HUMAN
631-866
236
0
-
-
2.1a
ENST00000302068
1a
ENSE00001171218
chr4:
155484108-155484284
177
FIBB_HUMAN
1-38
38
0
-
-
2.2d
ENST00000302068
2d
ENSE00001640255
chr4:
155486960-155487151
192
FIBB_HUMAN
39-102
64
4
B:58-72
E:58-72
H:58-72
K:58-72
15
15
15
15
2.3b
ENST00000302068
3b
ENSE00001645081
chr4:
155487641-155487824
184
FIBB_HUMAN
103-164
62
4
B:73-134
E:73-134
H:73-134
K:73-134
62
62
62
62
2.4b
ENST00000302068
4b
ENSE00001127321
chr4:
155488745-155488972
228
FIBB_HUMAN
164-240
77
4
B:134-210
E:134-210
H:134-210
K:134-210
77
77
77
77
2.5
ENST00000302068
5
ENSE00001127313
chr4:
155489533-155489646
114
FIBB_HUMAN
240-278
39
4
B:210-248
E:210-248
H:210-248
K:210-248
39
39
39
39
2.6
ENST00000302068
6
ENSE00001127308
chr4:
155490334-155490459
126
FIBB_HUMAN
278-320
43
4
B:248-290
E:248-290
H:248-290
K:248-290
43
43
43
43
2.7
ENST00000302068
7
ENSE00001127300
chr4:
155490666-155490951
286
FIBB_HUMAN
320-415
96
4
B:290-385
E:290-385
H:290-385
K:290-385
96
96
96
96
2.8c
ENST00000302068
8c
ENSE00001171210
chr4:
155491571-155492238
668
FIBB_HUMAN
415-491
77
4
B:385-458
E:385-458
H:385-458
K:385-458
74
74
74
74
3.1f
ENST00000336098
1f
ENSE00001820766
chr4:
155533800-155533684
117
FIBG_HUMAN
1-26
26
0
-
-
3.2a
ENST00000336098
2a
ENSE00001781463
chr4:
155533587-155533543
45
FIBG_HUMAN
27-41
15
4
C:14-15
F:14-15
I:2-15
L:5-15
2
2
14
11
3.2d
ENST00000336098
2d
ENSE00001624767
chr4:
155533353-155533170
184
FIBG_HUMAN
42-103
62
4
C:16-77
F:16-77
I:16-77
L:16-77
62
62
62
62
3.2g
ENST00000336098
2g
ENSE00001652916
chr4:
155533050-155532957
94
FIBG_HUMAN
103-134
32
4
C:77-108
F:77-108
I:77-108
L:77-108
32
32
32
32
3.3a
ENST00000336098
3a
ENSE00001127239
chr4:
155531349-155531219
131
FIBG_HUMAN
134-178
45
4
C:108-152
F:108-152
I:108-152
L:108-152
45
45
45
45
3.3f
ENST00000336098
3f
ENSE00002146570
chr4:
155530915-155530782
134
FIBG_HUMAN
178-222
45
4
C:152-196
F:152-196
I:152-196
L:152-196
45
45
45
45
3.4b
ENST00000336098
4b
ENSE00001127220
chr4:
155529802-155529618
185
FIBG_HUMAN
223-284
62
4
C:197-258
F:197-258
I:197-258
L:197-258
62
62
62
62
3.5
ENST00000336098
5
ENSE00001127212
chr4:
155528134-155527857
278
FIBG_HUMAN
284-377
94
4
C:258-351
F:258-351
I:258-351
L:258-351
94
94
94
94
3.6c
ENST00000336098
6c
ENSE00001344514
chr4:
155526218-155525728
491
FIBG_HUMAN
377-453
77
4
C:351-394
F:351-395
I:351-395
L:351-395
44
45
45
45
[
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SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3ghga_ (A:)
1b: SCOP_d3ghgd_ (D:)
1c: SCOP_d3ghgg_ (G:)
1d: SCOP_d3ghgj_ (J:)
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(
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(
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(
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(
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Class
:
Coiled coil proteins
(689)
Fold
:
Parallel coiled-coil
(407)
Superfamily
:
Fibrinogen coiled-coil and central regions
(71)
Family
:
automated matches
(1)
Protein domain
:
automated matches
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d3ghga_
A:
1b
d3ghgd_
D:
1c
d3ghgg_
G:
1d
d3ghgj_
J:
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CATH Domains
(3, 10)
Info
all CATH domains
1a: CATH_3ghgC02 (C:144-286,C:381-391)
1b: CATH_3ghgF02 (F:144-286,F:381-391)
1c: CATH_3ghgI02 (I:144-286,I:381-391)
1d: CATH_3ghgL02 (L:144-286,L:381-391)
2a: CATH_3ghgC03 (C:287-380)
2b: CATH_3ghgF03 (F:287-380)
2c: CATH_3ghgI03 (I:287-380)
2d: CATH_3ghgL03 (L:287-380)
3a: CATH_3ghgC01 (C:14-143)
3b: CATH_3ghgL01 (L:5-143)
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Homologous Superfamilies
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Gamma Fibrinogen; Chain A, domain 1
(58)
Homologous Superfamily
:
Gamma Fibrinogen, chain A, domain 1
(58)
Human (Homo sapiens)
(53)
1a
3ghgC02
C:144-286,C:381-391
1b
3ghgF02
F:144-286,F:381-391
1c
3ghgI02
I:144-286,I:381-391
1d
3ghgL02
L:144-286,L:381-391
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Gamma-fibrinogen Carboxyl Terminal Fragment; domain 2
(58)
Homologous Superfamily
:
Gamma-fibrinogen Carboxyl Terminal Fragment, domain 2
(58)
Human (Homo sapiens)
(53)
2a
3ghgC03
C:287-380
2b
3ghgF03
F:287-380
2c
3ghgI03
I:287-380
2d
3ghgL03
L:287-380
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
(552)
Homologous Superfamily
:
[code=1.20.5.50, no name defined]
(33)
Human (Homo sapiens)
(28)
3a
3ghgC01
C:14-143
3b
3ghgL01
L:5-143
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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