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3GGC
Asym. Unit
Info
Asym.Unit (75 KB)
Biol.Unit 1 (136 KB)
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(1)
Title
:
HUMAN HYPOXANTHINE-GUANINE PHOSPHORIBOSYLTRANSFERASE IN COMPLEX WITH 9-(2-PHOSPHONOETHOXYETHYL)HYPOXANTHINE
Authors
:
L. W. Guddat, D. T. Keough, J. Jersey
Date
:
27 Feb 09 (Deposition) - 18 Aug 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.78
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Purine Salvage, Phosphoribosyltransferase, Acyclic Nucleoside Phosphonate, Disease Mutation, Glycosyltransferase, Gout, Magnesium, Metal-Binding, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. T. Keough, D. Hockova, A. Holy, L. M. Naesens, T. S. Skinner-Adams, J. Jersey, L. W. Guddat
Inhibition Of Hypoxanthine-Guanine Phosphoribosyltransferas By Acyclic Nucleoside Phosphonates: A New Class Of Antimalarial Therapeutics.
J. Med. Chem. V. 52 4391 2009
[
close entry info
]
Hetero Components
(1, 2)
Info
All Hetero Components
1a: {2-[2-(6-OXO-1,6-DIHYDRO-9H-PURIN-... (H26a)
1b: {2-[2-(6-OXO-1,6-DIHYDRO-9H-PURIN-... (H26b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
H26
2
Ligand/Ion
{2-[2-(6-OXO-1,6-DIHYDRO-9H-PURIN-9-YL)ETHOXY]ETHYL}PHOSPHONIC ACID
[
close Hetero Component info
]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE B:135 , ASP B:137 , THR B:138 , GLY B:139 , THR B:141 , LYS B:165 , LYS B:185 , PHE B:186 , VAL B:187 , HOH B:221 , HOH B:227 , HOH B:260
BINDING SITE FOR RESIDUE H26 B 218
2
AC2
SOFTWARE
THR A:110 , ASP A:137 , THR A:138 , GLY A:139 , LYS A:140 , THR A:141 , LYS A:165 , PHE A:186 , VAL A:187 , HOH A:232 , HOH A:283
BINDING SITE FOR RESIDUE H26 A 218
[
close Site info
]
SAPs(SNPs)/Variants
(65, 129)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_006750 (G6D, chain A/B, )
02: VAR_006751 (V7G, chain A/B, )
03: VAR_006752 (G15D, chain A/B, )
04: VAR_006753 (G15S, chain A/B, )
05: VAR_006754 (D19V, chain A/B, )
06: VAR_071610 (C22F, chain A/B, )
07: VAR_006755 (C22W, chain A/B, )
08: VAR_006756 (L40P, chain A/B, )
09: VAR_006757 (I41F, chain A/B, )
10: VAR_006758 (I41T, chain A/B, )
11: VAR_071611 (D43Y, chain A/B, )
12: VAR_006760 (R44K, chain A/B, )
13: VAR_006761 (R47H, chain A/B, )
14: VAR_006763 (A49P, chain A/B, )
15: VAR_006762 (A49V, chain A/B, )
16: VAR_006764 (R50G, chain A/B, )
17: VAR_006765 (R50P, chain A/B, )
18: VAR_006766 (D51G, chain A/B, )
19: VAR_006767 (V52A, chain A/B, )
20: VAR_006768 (V52M, chain A/B, )
21: VAR_006769 (M53L, chain A/B, )
22: VAR_006770 (M56T, chain A/B, )
23: VAR_006771 (G57R, chain A/B, )
24: VAR_071612 (H59R, chain A, )
25: VAR_006772 (H60R, chain A/B, )
26: VAR_071613 (A63P, chain A/B, )
27: VAR_071614 (L64P, chain A/B, )
28: VAR_006773 (G69E, chain A/B, )
29: VAR_006774 (G70R, chain A/B, )
30: VAR_071615 (Y71C, chain A/B, )
31: VAR_006775 (F73L, chain A/B, )
32: VAR_071616 (L77Q, chain A/B, )
33: VAR_006776 (L77V, chain A/B, )
34: VAR_006777 (D79V, chain A/B, )
35: VAR_006778 (S103R, chain A/B, )
36: VAR_006779 (S109L, chain A/B, )
37: VAR_071618 (T123P, chain A/B, )
38: VAR_006780 (V129D, chain A/B, )
39: VAR_006781 (L130S, chain A/B, )
40: VAR_006782 (I131M, chain A/B, )
41: VAR_006783 (I131T, chain A/B, )
42: VAR_006784 (D134G, chain A/B, )
43: VAR_006785 (M142K, chain A/B, )
44: VAR_071619 (L146P, chain A/B, )
45: VAR_071620 (K158E, chain A/B, )
46: VAR_006787 (A160S, chain A/B, )
47: VAR_006788 (S161R, chain A/B, )
48: VAR_006789 (T167I, chain A/B, )
49: VAR_006790 (P175L, chain A/B, )
50: VAR_006791 (D176V, chain A/B, )
51: VAR_006792 (D176Y, chain A/B, )
52: VAR_006796 (I182T, chain A/B, )
53: VAR_071622 (D184G, chain A/B, )
54: VAR_006795 (V187A, chain A/B, )
55: VAR_071623 (A191V, chain A/B, )
56: VAR_006797 (D193E, chain A/B, )
57: VAR_006798 (D193N, chain A/B, )
58: VAR_006799 (Y194C, chain A/B, )
59: VAR_006800 (F198V, chain A/B, )
60: VAR_006801 (D200G, chain A/B, )
61: VAR_006802 (D200N, chain A/B, )
62: VAR_006803 (D200Y, chain A/B, )
63: VAR_006804 (H203D, chain A/B, )
64: VAR_006805 (H203R, chain A/B, )
65: VAR_006806 (C205Y, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_006750
G
7
D
HPRT_HUMAN
Disease (GOUT-HPRT)
---
A/B
G
6
D
02
UniProt
VAR_006751
V
8
G
HPRT_HUMAN
Disease (LNS)
---
A/B
V
7
G
03
UniProt
VAR_006752
G
16
D
HPRT_HUMAN
Disease (LNS)
---
A/B
G
15
D
04
UniProt
VAR_006753
G
16
S
HPRT_HUMAN
Disease (GOUT-HPRT)
---
A/B
G
15
S
05
UniProt
VAR_006754
D
20
V
HPRT_HUMAN
Disease (GOUT-HPRT)
---
A/B
D
19
V
06
UniProt
VAR_071610
C
23
F
HPRT_HUMAN
Disease (GOUT-HPRT)
---
A/B
C
22
F
07
UniProt
VAR_006755
C
23
W
HPRT_HUMAN
Disease (GOUT-HPRT)
---
A/B
C
22
W
08
UniProt
VAR_006756
L
41
P
HPRT_HUMAN
Disease (LNS)
---
A/B
L
40
P
09
UniProt
VAR_006757
I
42
F
HPRT_HUMAN
Disease (LNS)
---
A/B
I
41
F
10
UniProt
VAR_006758
I
42
T
HPRT_HUMAN
Disease (LNS)
---
A/B
I
41
T
11
UniProt
VAR_071611
D
44
Y
HPRT_HUMAN
Disease (LNS)
---
A/B
D
43
Y
12
UniProt
VAR_006760
R
45
K
HPRT_HUMAN
Disease (LNS)
---
A/B
R
44
K
13
UniProt
VAR_006761
R
48
H
HPRT_HUMAN
Disease (GOUT-HPRT)
---
A/B
R
47
H
14
UniProt
VAR_006763
A
50
P
HPRT_HUMAN
Disease (LNS)
---
A/B
A
49
P
15
UniProt
VAR_006762
A
50
V
HPRT_HUMAN
Disease (LNS)
---
A/B
A
49
V
16
UniProt
VAR_006764
R
51
G
HPRT_HUMAN
Disease (GOUT-HPRT)
---
A/B
R
50
G
17
UniProt
VAR_006765
R
51
P
HPRT_HUMAN
Disease (LNS)
---
A/B
R
50
P
18
UniProt
VAR_006766
D
52
G
HPRT_HUMAN
Unclassified
---
A/B
D
51
G
19
UniProt
VAR_006767
V
53
A
HPRT_HUMAN
Disease (GOUT-HPRT)
---
A/B
V
52
A
20
UniProt
VAR_006768
V
53
M
HPRT_HUMAN
Disease (GOUT-HPRT)
---
A/B
V
52
M
21
UniProt
VAR_006769
M
54
L
HPRT_HUMAN
Disease (LNS)
---
A/B
M
53
L
22
UniProt
VAR_006770
M
57
T
HPRT_HUMAN
Disease (LNS)
---
A/B
M
56
T
23
UniProt
VAR_006771
G
58
R
HPRT_HUMAN
Disease (GOUT-HPRT)
---
A/B
G
57
R
24
UniProt
VAR_071612
H
60
R
HPRT_HUMAN
Disease (GOUT-HPRT)
---
A
H
59
R
25
UniProt
VAR_006772
H
61
R
HPRT_HUMAN
Unclassified
---
A/B
H
60
R
26
UniProt
VAR_071613
A
64
P
HPRT_HUMAN
Disease (LNS)
---
A/B
A
63
P
27
UniProt
VAR_071614
L
65
P
HPRT_HUMAN
Disease (LNS)
---
A/B
L
64
P
28
UniProt
VAR_006773
G
70
E
HPRT_HUMAN
Disease (LNS)
---
A/B
G
69
E
29
UniProt
VAR_006774
G
71
R
HPRT_HUMAN
Disease (LNS)
---
A/B
G
70
R
30
UniProt
VAR_071615
Y
72
C
HPRT_HUMAN
Disease (LNS)
---
A/B
Y
71
C
31
UniProt
VAR_006775
F
74
L
HPRT_HUMAN
Disease (LNS)
---
A/B
F
73
L
32
UniProt
VAR_071616
L
78
Q
HPRT_HUMAN
Disease (LNS)
---
A/B
L
77
Q
33
UniProt
VAR_006776
L
78
V
HPRT_HUMAN
Disease (GOUT-HPRT)
---
A/B
L
77
V
34
UniProt
VAR_006777
D
80
V
HPRT_HUMAN
Disease (GOUT-HPRT)
---
A/B
D
79
V
35
UniProt
VAR_006778
S
104
R
HPRT_HUMAN
Disease (GOUT-HPRT)
---
A/B
S
103
R
36
UniProt
VAR_006779
S
110
L
HPRT_HUMAN
Disease (GOUT-HPRT)
---
A/B
S
109
L
37
UniProt
VAR_071618
T
124
P
HPRT_HUMAN
Disease (GOUT-HPRT)
---
A/B
T
123
P
38
UniProt
VAR_006780
V
130
D
HPRT_HUMAN
Disease (LNS)
---
A/B
V
129
D
39
UniProt
VAR_006781
L
131
S
HPRT_HUMAN
Disease (LNS)
---
A/B
L
130
S
40
UniProt
VAR_006782
I
132
M
HPRT_HUMAN
Disease (GOUT-HPRT)
---
A/B
I
131
M
41
UniProt
VAR_006783
I
132
T
HPRT_HUMAN
Disease (LNS)
---
A/B
I
131
T
42
UniProt
VAR_006784
D
135
G
HPRT_HUMAN
Disease (GOUT-HPRT)
---
A/B
D
134
G
43
UniProt
VAR_006785
M
143
K
HPRT_HUMAN
Disease (LNS)
---
A/B
M
142
K
44
UniProt
VAR_071619
L
147
P
HPRT_HUMAN
Disease (LNS)
---
A/B
L
146
P
45
UniProt
VAR_071620
K
159
E
HPRT_HUMAN
Disease (LNS)
---
A/B
K
158
E
46
UniProt
VAR_006787
A
161
S
HPRT_HUMAN
Disease (GOUT-HPRT)
---
A/B
A
160
S
47
UniProt
VAR_006788
S
162
R
HPRT_HUMAN
Disease (LNS)
---
A/B
S
161
R
48
UniProt
VAR_006789
T
168
I
HPRT_HUMAN
Disease (GOUT-HPRT)
---
A/B
T
167
I
49
UniProt
VAR_006790
P
176
L
HPRT_HUMAN
Disease (LNS)
---
A/B
P
175
L
50
UniProt
VAR_006791
D
177
V
HPRT_HUMAN
Disease (LNS)
---
A/B
D
176
V
51
UniProt
VAR_006792
D
177
Y
HPRT_HUMAN
Disease (LNS)
---
A/B
D
176
Y
52
UniProt
VAR_006796
I
183
T
HPRT_HUMAN
Disease (GOUT-HPRT)
---
A/B
I
182
T
53
UniProt
VAR_071622
D
185
G
HPRT_HUMAN
Disease (GOUT-HPRT)
---
A/B
D
184
G
54
UniProt
VAR_006795
V
188
A
HPRT_HUMAN
Unclassified
---
A/B
V
187
A
55
UniProt
VAR_071623
A
192
V
HPRT_HUMAN
Disease (GOUT-HPRT)
---
A/B
A
191
V
56
UniProt
VAR_006797
D
194
E
HPRT_HUMAN
Disease (GOUT-HPRT)
---
A/B
D
193
E
57
UniProt
VAR_006798
D
194
N
HPRT_HUMAN
Disease (LNS)
---
A/B
D
193
N
58
UniProt
VAR_006799
Y
195
C
HPRT_HUMAN
Disease (GOUT-HPRT)
---
A/B
Y
194
C
59
UniProt
VAR_006800
F
199
V
HPRT_HUMAN
Disease (LNS)
---
A/B
F
198
V
60
UniProt
VAR_006801
D
201
G
HPRT_HUMAN
Disease (GOUT-HPRT)
---
A/B
D
200
G
61
UniProt
VAR_006802
D
201
N
HPRT_HUMAN
Disease (GOUT-HPRT)
---
A/B
D
200
N
62
UniProt
VAR_006803
D
201
Y
HPRT_HUMAN
Disease (LNS)
---
A/B
D
200
Y
63
UniProt
VAR_006804
H
204
D
HPRT_HUMAN
Disease (LNS)
---
A/B
H
203
D
64
UniProt
VAR_006805
H
204
R
HPRT_HUMAN
Disease (LNS)
---
A/B
H
203
R
65
UniProt
VAR_006806
C
206
Y
HPRT_HUMAN
Disease (LNS)
---
A/B
C
205
Y
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PUR_PYR_PR_TRANSFER (A:129-141,B:129-141)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PUR_PYR_PR_TRANSFER
PS00103
Purine/pyrimidine phosphoribosyl transferases signature.
HPRT_HUMAN
130-142
2
A:129-141
B:129-141
[
close PROSITE info
]
Exons
(9, 18)
Info
All Exons
Exon 1.1b (A:4-8 | B:3-8)
Exon 1.3a (A:9-44 | B:9-44)
Exon 1.4 (A:44-105 | B:44-105 (gaps))
Exon 1.5 (A:108-127 | B:106-127 (gaps))
Exon 1.7 (A:128-133 | B:128-133)
Exon 1.9 (A:134-161 | B:134-161)
Exon 1.10 (A:161-177 | B:161-177)
Exon 1.11b (A:177-202 | B:177-202)
Exon 1.12b (A:203-217 | B:203-217)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1b
02: Boundary 1.1b/1.3a
03: Boundary 1.3a/1.4
04: Boundary 1.4/1.5
05: Boundary 1.5/1.7
06: Boundary 1.7/1.9
07: Boundary 1.9/1.10
08: Boundary 1.10/1.11b
09: Boundary 1.11b/1.12b
10: Boundary 1.12b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000298556
1b
ENSE00001913528
X:133594183-133594368
186
HPRT_HUMAN
1-9
9
2
A:4-8
B:3-8
5
6
1.3a
ENST00000298556
3a
ENSE00001095669
X:133607389-133607495
107
HPRT_HUMAN
10-45
36
2
A:9-44
B:9-44
36
36
1.4
ENST00000298556
4
ENSE00001095666
X:133609211-133609394
184
HPRT_HUMAN
45-106
62
2
A:44-105
B:44-105 (gaps)
62
62
1.5
ENST00000298556
5
ENSE00001436398
X:133620495-133620560
66
HPRT_HUMAN
107-128
22
2
A:108-127
B:106-127 (gaps)
20
22
1.7
ENST00000298556
7
ENSE00001700729
X:133624218-133624235
18
HPRT_HUMAN
129-134
6
2
A:128-133
B:128-133
6
6
1.9
ENST00000298556
9
ENSE00001095665
X:133627538-133627620
83
HPRT_HUMAN
135-162
28
2
A:134-161
B:134-161
28
28
1.10
ENST00000298556
10
ENSE00001095662
X:133632420-133632466
47
HPRT_HUMAN
162-178
17
2
A:161-177
B:161-177
17
17
1.11b
ENST00000298556
11b
ENSE00001095667
X:133632638-133632714
77
HPRT_HUMAN
178-203
26
2
A:177-202
B:177-202
26
26
1.12b
ENST00000298556
12b
ENSE00001904310
X:133634060-133634698
639
HPRT_HUMAN
204-218
15
2
A:203-217
B:203-217
15
15
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3ggca_ (A:)
1b: SCOP_d3ggcb_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PRTase-like
(145)
Superfamily
:
PRTase-like
(145)
Family
:
Phosphoribosyltransferases (PRTases)
(100)
Protein domain
:
Hypoxanthine-guanine PRTase (HGPRTase)
(11)
Human (Homo sapiens) [TaxId: 9606]
(9)
1a
d3ggca_
A:
1b
d3ggcb_
B:
[
close SCOP info
]
CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3ggcA00 (A:4-217)
1b: CATH_3ggcB00 (B:3-217)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.2020, no name defined]
(117)
Human (Homo sapiens)
(19)
1a
3ggcA00
A:4-217
1b
3ggcB00
B:3-217
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Asymmetric Unit 1
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