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3GEN
Biol. Unit 1
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Asym.Unit (110 KB)
Biol.Unit 1 (105 KB)
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(1)
Title
:
THE 1.6 A CRYSTAL STRUCTURE OF HUMAN BRUTON'S TYROSINE KINASE BOUND TO A PYRROLOPYRIMIDINE-CONTAINING COMPOUND
Authors
:
D. J. Marcotte, Y. T. Liu, R. M. Arduini, C. A. Hession, K. Miatkowski, C. P. Wildes, P. F. Cullen, B. Hopkins, E. Mertsching, T. J. Jenkins, M. J. Romanowski, D. P. Baker, L. F. Silvian
Date
:
25 Feb 09 (Deposition) - 19 Jan 10 (Release) - 09 Mar 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Bruton'S Tyrosine Kinase, 4-Amino-5-(4-Phenoxyphenyl)-5H- Pyrrolo[3, 2-D]Pyrimidin-7-Yl-Cyclopentane, Tec-Family, Complex, Acetylation, Atp-Binding, Cytoplasm, Disease Mutation, Kinase, Membrane, Metal-Binding, Nucleotide- Binding, Nucleus, Phosphoprotein, Polymorphism, Sh2 Domain, Sh3 Domain, Transferase, Tyrosine-Protein Kinase, Zinc, Zinc-Finger
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. J. Marcotte, Y. T. Liu, R. M. Arduini, C. A. Hession, K. Miatkowski, C. P. Wildes, P. F. Cullen, V. Hong, B. T. Hopkins, E. Mertsching, T. J. Jenkins, M. J. Romanowski, D. P. Baker, L. F. Silvian
Structures Of Human Bruton'S Tyrosine Kinase In Active And Inactive Conformations Suggest A Mechanism Of Activation For Tec Family Kinases.
Protein Sci. V. 19 429 2010
[
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: 4-AMINO-5-(4-PHENOXYPHENYL)-7H-PYR... (B43a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
B43
1
Ligand/Ion
4-AMINO-5-(4-PHENOXYPHENYL)-7H-PYRROLO[2,3-D]PYRIMIDIN-7-YL-CYCLOPENTANE
[
close Hetero Component info
]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:37 , LEU A:408 , ALA A:428 , LYS A:430 , MET A:449 , THR A:474 , GLU A:475 , MET A:477 , SER A:538 , ASP A:539 , PHE A:540
BINDING SITE FOR RESIDUE B43 A 1
[
close Site info
]
SAPs(SNPs)/Variants
(68, 68)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_006239 (L408P, chain A, )
02: VAR_008313 (G414R, chain A, )
03: VAR_006240 (Y418H, chain A, )
04: VAR_006241 (I429N, chain A, )
05: VAR_006242 (K430E, chain A, )
06: VAR_008314 (K430R, chain A, )
07: VAR_008315 (E445D, chain A, )
08: VAR_008316 (G462D, chain A, )
09: VAR_008317 (G462V, chain A, )
10: VAR_006243 (Y476D, chain A, )
11: VAR_006244 (M477R, chain A, )
12: VAR_006245 (C502F, chain A, )
13: VAR_006246 (C502W, chain A, )
14: VAR_006247 (C506R, chain A, )
15: VAR_006248 (C506Y, chain A, )
16: VAR_008318 (A508D, chain A, )
17: VAR_008319 (M509I, chain A, )
18: VAR_006249 (M509V, chain A, )
19: VAR_008961 (L512P, chain A, )
20: VAR_008962 (L512Q, chain A, )
21: VAR_008320 (L518R, chain A, )
22: VAR_006251 (R520Q, chain A, )
23: VAR_008321 (D521G, chain A, )
24: VAR_006252 (D521H, chain A, )
25: VAR_006253 (D521N, chain A, )
26: VAR_008322 (A523E, chain A, )
27: VAR_008323 (R525G, chain A, )
28: VAR_006254 (R525P, chain A, )
29: VAR_006255 (R525Q, chain A, )
30: VAR_006256 (N526K, chain A, )
31: VAR_008324 (V535F, chain A, )
32: VAR_006257 (L542P, chain A, )
33: VAR_008963 (R544G, chain A, )
34: VAR_006258 (R544K, chain A, )
35: VAR_008325 (F559S, chain A, )
36: VAR_006259 (R562P, chain A, )
37: VAR_006260 (R562W, chain A, )
38: VAR_008326 (W563L, chain A, )
39: VAR_006261 (E567K, chain A, )
40: VAR_008964 (S578Y, chain A, )
41: VAR_006262 (W581R, chain A, )
42: VAR_006263 (A582V, chain A, )
43: VAR_008327 (F583S, chain A, )
44: VAR_006264 (M587L, chain A, )
45: VAR_008328 (E589D, chain A, )
46: VAR_006265 (E589G, chain A, )
47: VAR_008965 (E589K, chain A, )
48: VAR_006267 (S592P, chain A, )
49: VAR_006268 (G594E, chain A, )
50: VAR_006269 (G594R, chain A, )
51: VAR_006270 (Y598C, chain A, )
52: VAR_006271 (A607D, chain A, )
53: VAR_006272 (G613D, chain A, )
54: VAR_008330 (P619A, chain A, )
55: VAR_006273 (P619S, chain A, )
56: VAR_008331 (P619T, chain A, )
57: VAR_008332 (A622P, chain A, )
58: VAR_008333 (V626G, chain A, )
59: VAR_006274 (M630I, chain A, )
60: VAR_006275 (M630K, chain A, )
61: VAR_008334 (M630T, chain A, )
62: VAR_006276 (C633Y, chain A, )
63: VAR_006277 (R641C, chain A, )
64: VAR_006278 (R641H, chain A, )
65: VAR_008335 (F644L, chain A, )
66: VAR_006279 (F644S, chain A, )
67: VAR_006280 (L647P, chain A, )
68: VAR_006281 (L652P, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_006239
L
408
P
BTK_HUMAN
Disease (XLA)
---
A
L
408
P
02
UniProt
VAR_008313
G
414
R
BTK_HUMAN
Disease (XLA)
---
A
G
414
R
03
UniProt
VAR_006240
Y
418
H
BTK_HUMAN
Disease (XLA)
---
A
Y
418
H
04
UniProt
VAR_006241
I
429
N
BTK_HUMAN
Disease (XLA)
---
A
I
429
N
05
UniProt
VAR_006242
K
430
E
BTK_HUMAN
Disease (XLA)
---
A
K
430
E
06
UniProt
VAR_008314
K
430
R
BTK_HUMAN
Disease (XLA)
---
A
K
430
R
07
UniProt
VAR_008315
E
445
D
BTK_HUMAN
Disease (XLA)
---
A
E
445
D
08
UniProt
VAR_008316
G
462
D
BTK_HUMAN
Disease (XLA)
---
A
G
462
D
09
UniProt
VAR_008317
G
462
V
BTK_HUMAN
Disease (XLA)
---
A
G
462
V
10
UniProt
VAR_006243
Y
476
D
BTK_HUMAN
Disease (XLA)
---
A
Y
476
D
11
UniProt
VAR_006244
M
477
R
BTK_HUMAN
Disease (XLA)
---
A
M
477
R
12
UniProt
VAR_006245
C
502
F
BTK_HUMAN
Disease (XLA)
---
A
C
502
F
13
UniProt
VAR_006246
C
502
W
BTK_HUMAN
Disease (XLA)
---
A
C
502
W
14
UniProt
VAR_006247
C
506
R
BTK_HUMAN
Disease (XLA)
---
A
C
506
R
15
UniProt
VAR_006248
C
506
Y
BTK_HUMAN
Disease (XLA)
---
A
C
506
Y
16
UniProt
VAR_008318
A
508
D
BTK_HUMAN
Disease (XLA)
---
A
A
508
D
17
UniProt
VAR_008319
M
509
I
BTK_HUMAN
Disease (XLA)
---
A
M
509
I
18
UniProt
VAR_006249
M
509
V
BTK_HUMAN
Disease (XLA)
---
A
M
509
V
19
UniProt
VAR_008961
L
512
P
BTK_HUMAN
Disease (XLA)
---
A
L
512
P
20
UniProt
VAR_008962
L
512
Q
BTK_HUMAN
Disease (XLA)
---
A
L
512
Q
21
UniProt
VAR_008320
L
518
R
BTK_HUMAN
Disease (XLA)
---
A
L
518
R
22
UniProt
VAR_006251
R
520
Q
BTK_HUMAN
Disease (XLA)
---
A
R
520
Q
23
UniProt
VAR_008321
D
521
G
BTK_HUMAN
Disease (XLA)
---
A
D
521
G
24
UniProt
VAR_006252
D
521
H
BTK_HUMAN
Disease (XLA)
---
A
D
521
H
25
UniProt
VAR_006253
D
521
N
BTK_HUMAN
Disease (XLA)
---
A
D
521
N
26
UniProt
VAR_008322
A
523
E
BTK_HUMAN
Disease (XLA)
---
A
A
523
E
27
UniProt
VAR_008323
R
525
G
BTK_HUMAN
Disease (XLA)
---
A
R
525
G
28
UniProt
VAR_006254
R
525
P
BTK_HUMAN
Disease (XLA)
---
A
R
525
P
29
UniProt
VAR_006255
R
525
Q
BTK_HUMAN
Disease (XLA)
---
A
R
525
Q
30
UniProt
VAR_006256
N
526
K
BTK_HUMAN
Disease (XLA)
---
A
N
526
K
31
UniProt
VAR_008324
V
535
F
BTK_HUMAN
Disease (XLA)
---
A
V
535
F
32
UniProt
VAR_006257
L
542
P
BTK_HUMAN
Disease (XLA)
---
A
L
542
P
33
UniProt
VAR_008963
R
544
G
BTK_HUMAN
Disease (XLA)
---
A
R
544
G
34
UniProt
VAR_006258
R
544
K
BTK_HUMAN
Disease (XLA)
---
A
R
544
K
35
UniProt
VAR_008325
F
559
S
BTK_HUMAN
Disease (XLA)
---
A
F
559
S
36
UniProt
VAR_006259
R
562
P
BTK_HUMAN
Disease (XLA)
28935176
A
R
562
P
37
UniProt
VAR_006260
R
562
W
BTK_HUMAN
Disease (XLA)
---
A
R
562
W
38
UniProt
VAR_008326
W
563
L
BTK_HUMAN
Disease (XLA)
---
A
W
563
L
39
UniProt
VAR_006261
E
567
K
BTK_HUMAN
Disease (XLA)
---
A
E
567
K
40
UniProt
VAR_008964
S
578
Y
BTK_HUMAN
Disease (XLA)
---
A
S
578
Y
41
UniProt
VAR_006262
W
581
R
BTK_HUMAN
Disease (XLA)
---
A
W
581
R
42
UniProt
VAR_006263
A
582
V
BTK_HUMAN
Disease (XLA)
---
A
A
582
V
43
UniProt
VAR_008327
F
583
S
BTK_HUMAN
Disease (XLA)
---
A
F
583
S
44
UniProt
VAR_006264
M
587
L
BTK_HUMAN
Disease (XLA)
---
A
M
587
L
45
UniProt
VAR_008328
E
589
D
BTK_HUMAN
Disease (XLA)
---
A
E
589
D
46
UniProt
VAR_006265
E
589
G
BTK_HUMAN
Disease (XLA)
---
A
E
589
G
47
UniProt
VAR_008965
E
589
K
BTK_HUMAN
Disease (XLA)
---
A
E
589
K
48
UniProt
VAR_006267
S
592
P
BTK_HUMAN
Disease (XLA)
---
A
S
592
P
49
UniProt
VAR_006268
G
594
E
BTK_HUMAN
Disease (XLA)
---
A
G
594
E
50
UniProt
VAR_006269
G
594
R
BTK_HUMAN
Disease (XLA)
---
A
G
594
R
51
UniProt
VAR_006270
Y
598
C
BTK_HUMAN
Disease (XLA)
---
A
Y
598
C
52
UniProt
VAR_006271
A
607
D
BTK_HUMAN
Disease (XLA)
---
A
A
607
D
53
UniProt
VAR_006272
G
613
D
BTK_HUMAN
Disease (XLA)
---
A
G
613
D
54
UniProt
VAR_008330
P
619
A
BTK_HUMAN
Disease (XLA)
---
A
P
619
A
55
UniProt
VAR_006273
P
619
S
BTK_HUMAN
Disease (XLA)
---
A
P
619
S
56
UniProt
VAR_008331
P
619
T
BTK_HUMAN
Disease (XLA)
---
A
P
619
T
57
UniProt
VAR_008332
A
622
P
BTK_HUMAN
Disease (XLA)
---
A
A
622
P
58
UniProt
VAR_008333
V
626
G
BTK_HUMAN
Disease (XLA)
---
A
V
626
G
59
UniProt
VAR_006274
M
630
I
BTK_HUMAN
Polymorphism
---
A
M
630
I
60
UniProt
VAR_006275
M
630
K
BTK_HUMAN
Disease (XLA)
---
A
M
630
K
61
UniProt
VAR_008334
M
630
T
BTK_HUMAN
Disease (XLA)
---
A
M
630
T
62
UniProt
VAR_006276
C
633
Y
BTK_HUMAN
Disease (XLA)
---
A
C
633
Y
63
UniProt
VAR_006277
R
641
C
BTK_HUMAN
Disease (XLA)
---
A
R
641
C
64
UniProt
VAR_006278
R
641
H
BTK_HUMAN
Disease (XLA)
---
A
R
641
H
65
UniProt
VAR_008335
F
644
L
BTK_HUMAN
Disease (XLA)
---
A
F
644
L
66
UniProt
VAR_006279
F
644
S
BTK_HUMAN
Disease (XLA)
---
A
F
644
S
67
UniProt
VAR_006280
L
647
P
BTK_HUMAN
Disease (XLA)
---
A
L
647
P
68
UniProt
VAR_006281
L
652
P
BTK_HUMAN
Disease (XLA)
---
A
L
652
P
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:408-430)
2: PROTEIN_KINASE_TYR (A:517-529)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
BTK_HUMAN
408-430
1
A:408-430
2
PROTEIN_KINASE_TYR
PS00109
Tyrosine protein kinases specific active-site signature.
BTK_HUMAN
517-529
1
A:517-529
[
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3gena_ (A:)
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(
)
(
)
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(
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(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
automated matches
(542)
Human (Homo sapiens) [TaxId: 9606]
(452)
1a
d3gena_
A:
[
close SCOP info
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_3genA01 (A:392-476)
2a: CATH_3genA02 (A:477-658)
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(
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(
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Human (Homo sapiens)
(1036)
1a
3genA01
A:392-476
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Transferase(Phosphotransferase); domain 1
(1379)
Homologous Superfamily
:
Transferase(Phosphotransferase) domain 1
(1379)
Human (Homo sapiens)
(1049)
2a
3genA02
A:477-658
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Pfam Domains
(0, 0)
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all PFAM domains
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