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3GD3
Asym. Unit
Info
Asym.Unit (639 KB)
Biol.Unit 1 (158 KB)
Biol.Unit 2 (162 KB)
Biol.Unit 3 (161 KB)
Biol.Unit 4 (164 KB)
Biol.Unit 5 (7 KB)
Biol.Unit 6 (8 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A NATURALLY FOLDED MURINE APOPTOSIS INDUCING FACTOR
Authors
:
I. F. Sevrioukova
Date
:
23 Feb 09 (Deposition) - 19 May 09 (Release) - 28 Jul 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.95
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Keywords
:
Alpha And Beta Protein, Acetylation, Apoptosis, Dna-Binding, Fad, Flavoprotein, Mitochondrion, Nucleus, Oxidoreductase, Phosphoprotein, Transit Peptide
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. F. Sevrioukova
Redox-Linked Conformational Dynamics In Apoptosis-Inducing Factor
J. Mol. Biol. V. 390 924 2009
(for further references see the
PDB file header
)
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Hetero Components
(2, 21)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
1b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
1c: FLAVIN-ADENINE DINUCLEOTIDE (FADc)
1d: FLAVIN-ADENINE DINUCLEOTIDE (FADd)
2a: (UNKa)
2b: (UNKb)
2c: (UNKc)
2d: (UNKd)
2e: (UNKe)
2f: (UNKf)
2g: (UNKg)
2h: (UNKh)
2i: (UNKi)
2j: (UNKj)
2k: (UNKk)
2l: (UNKl)
2m: (UNKm)
2n: (UNKn)
2o: (UNKo)
2p: (UNKp)
2q: (UNKq)
View:
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No.
Name
Count
Type
Full Name
1
FAD
4
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
2
UNK
17
Mod. Amino Acid
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:137 , GLY A:138 , GLY A:139 , THR A:140 , ALA A:141 , GLU A:163 , ARG A:171 , PRO A:172 , LYS A:176 , LYS A:231 , VAL A:232 , THR A:259 , GLY A:260 , ARG A:284 , LEU A:310 , GLY A:436 , ASP A:437 , GLU A:452 , HIS A:453 , HIS A:454 , PHE A:481 , TRP A:482 , HOH A:614
BINDING SITE FOR RESIDUE FAD A 1611
2
AC2
SOFTWARE
ILE B:136 , GLY B:137 , GLY B:139 , THR B:140 , ALA B:141 , VAL B:161 , GLU B:163 , ASP B:164 , ARG B:171 , PRO B:172 , LYS B:176 , LYS B:231 , VAL B:232 , THR B:259 , GLY B:260 , ARG B:284 , LEU B:310 , GLY B:436 , ASP B:437 , HIS B:454 , ALA B:457 , PHE B:481 , TRP B:482
BINDING SITE FOR RESIDUE FAD B 1611
3
AC3
SOFTWARE
GLY C:137 , GLY C:138 , GLY C:139 , THR C:140 , ALA C:141 , VAL C:161 , GLU C:163 , ASP C:164 , ARG C:171 , PRO C:172 , LYS C:176 , LYS C:230 , LYS C:231 , VAL C:232 , ALA C:258 , THR C:259 , GLY C:260 , ARG C:284 , LEU C:310 , GLY C:436 , ASP C:437 , HIS C:454 , ALA C:457 , PHE C:481 , TRP C:482
BINDING SITE FOR RESIDUE FAD C 1611
4
AC4
SOFTWARE
GLY D:137 , GLY D:138 , GLY D:139 , THR D:140 , ALA D:141 , VAL D:161 , SER D:162 , GLU D:163 , ASP D:164 , ARG D:171 , PRO D:172 , SER D:175 , LYS D:176 , LYS D:230 , LYS D:231 , VAL D:232 , ALA D:258 , THR D:259 , GLY D:260 , ARG D:284 , LEU D:310 , GLY D:436 , ASP D:437 , HIS D:454 , ALA D:457 , TRP D:482
BINDING SITE FOR RESIDUE FAD D 1611
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_3gd3C03 (C:480-610)
1b: CATH_3gd3D03 (D:480-610)
1c: CATH_3gd3B03 (B:480-610)
1d: CATH_3gd3A03 (A:480-610)
2a: CATH_3gd3A01 (A:128-168,A:211-260,A:402-475)
2b: CATH_3gd3C02 (C:171-203,C:264-396)
2c: CATH_3gd3D02 (D:171-203,D:264-396)
2d: CATH_3gd3C01 (C:128-168,C:211-260,C:402-475)
2e: CATH_3gd3D01 (D:128-168,D:211-260,D:402-475)
2f: CATH_3gd3B01 (B:127-168,B:211-260,B:402-475)
2g: CATH_3gd3A02 (A:171-203,A:264-396)
2h: CATH_3gd3B02 (B:171-203,B:264-396)
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Enolase-like; domain 1
(252)
Homologous Superfamily
:
[code=3.30.390.30, no name defined]
(99)
Mouse (Mus musculus)
(1)
1a
3gd3C03
C:480-610
1b
3gd3D03
D:480-610
1c
3gd3B03
B:480-610
1d
3gd3A03
A:480-610
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
FAD/NAD(P)-binding domain
(373)
Homologous Superfamily
:
[code=3.50.50.60, no name defined]
(373)
Mouse (Mus musculus)
(2)
2a
3gd3A01
A:128-168,A:211-260,A:402-475
2b
3gd3C02
C:171-203,C:264-396
2c
3gd3D02
D:171-203,D:264-396
2d
3gd3C01
C:128-168,C:211-260,C:402-475
2e
3gd3D01
D:128-168,D:211-260,D:402-475
2f
3gd3B01
B:127-168,B:211-260,B:402-475
2g
3gd3A02
A:171-203,A:264-396
2h
3gd3B02
B:171-203,B:264-396
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (639 KB)
Header - Asym.Unit
Biol.Unit 1 (158 KB)
Header - Biol.Unit 1
Biol.Unit 2 (162 KB)
Header - Biol.Unit 2
Biol.Unit 3 (161 KB)
Header - Biol.Unit 3
Biol.Unit 4 (164 KB)
Header - Biol.Unit 4
Biol.Unit 5 (7 KB)
Header - Biol.Unit 5
Biol.Unit 6 (8 KB)
Header - Biol.Unit 6
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