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3GCF
Biol. Unit 3
Info
Asym.Unit (979 KB)
Biol.Unit 1 (207 KB)
Biol.Unit 2 (206 KB)
Biol.Unit 3 (204 KB)
Biol.Unit 4 (203 KB)
Biol.Unit 5 (206 KB)
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(1)
Title
:
TERMINAL OXYGENASE OF CARBAZOLE 1,9A-DIOXYGENASE FROM NOCARDIOIDES AROMATICIVORANS IC177
Authors
:
K. Inoue, H. Nojiri
Date
:
22 Feb 09 (Deposition) - 15 Sep 09 (Release) - 15 Sep 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Biol. Unit 3: G,H,I (1x)
Biol. Unit 4: J,K,L (1x)
Biol. Unit 5: M,N,O (1x)
Keywords
:
Rieske Oxygenase, 2Fe-2S, Dioxygenase, Carbazole, Electron Transfer, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Inoue, Y. Ashikawa, T. Umeda, M. Abo, J. Katsuki, Y. Usami, H. Noguchi, Z. Fujimoto, T. Terada, H. Yamane, H. Nojiri
Specific Interactions Between The Ferredoxin And Terminal Oxygenase Components Of A Class Iib Rieske Nonheme Iron Oxygenase, Carbazole 1, 9A-Dioxygenase.
J. Mol. Biol. V. 392 436 2009
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1aa: CHLORIDE ION (CLaa)
1ab: CHLORIDE ION (CLab)
1ac: CHLORIDE ION (CLac)
1ad: CHLORIDE ION (CLad)
1ae: CHLORIDE ION (CLae)
1af: CHLORIDE ION (CLaf)
1ag: CHLORIDE ION (CLag)
1ah: CHLORIDE ION (CLah)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
1k: CHLORIDE ION (CLk)
1l: CHLORIDE ION (CLl)
1m: CHLORIDE ION (CLm)
1n: CHLORIDE ION (CLn)
1o: CHLORIDE ION (CLo)
1p: CHLORIDE ION (CLp)
1q: CHLORIDE ION (CLq)
1r: CHLORIDE ION (CLr)
1s: CHLORIDE ION (CLs)
1t: CHLORIDE ION (CLt)
1u: CHLORIDE ION (CLu)
1v: CHLORIDE ION (CLv)
1w: CHLORIDE ION (CLw)
1x: CHLORIDE ION (CLx)
1y: CHLORIDE ION (CLy)
1z: CHLORIDE ION (CLz)
2a: FE (II) ION (FE2a)
2b: FE (II) ION (FE2b)
2c: FE (II) ION (FE2c)
2d: FE (II) ION (FE2d)
2e: FE (II) ION (FE2e)
2f: FE (II) ION (FE2f)
2g: FE (II) ION (FE2g)
2h: FE (II) ION (FE2h)
2i: FE (II) ION (FE2i)
2j: FE (II) ION (FE2j)
2k: FE (II) ION (FE2k)
2l: FE (II) ION (FE2l)
2m: FE (II) ION (FE2m)
2n: FE (II) ION (FE2n)
2o: FE (II) ION (FE2o)
3a: FE2/S2 (INORGANIC) CLUSTER (FESa)
3b: FE2/S2 (INORGANIC) CLUSTER (FESb)
3c: FE2/S2 (INORGANIC) CLUSTER (FESc)
3d: FE2/S2 (INORGANIC) CLUSTER (FESd)
3e: FE2/S2 (INORGANIC) CLUSTER (FESe)
3f: FE2/S2 (INORGANIC) CLUSTER (FESf)
3g: FE2/S2 (INORGANIC) CLUSTER (FESg)
3h: FE2/S2 (INORGANIC) CLUSTER (FESh)
3i: FE2/S2 (INORGANIC) CLUSTER (FESi)
3j: FE2/S2 (INORGANIC) CLUSTER (FESj)
3k: FE2/S2 (INORGANIC) CLUSTER (FESk)
3l: FE2/S2 (INORGANIC) CLUSTER (FESl)
3m: FE2/S2 (INORGANIC) CLUSTER (FESm)
3n: FE2/S2 (INORGANIC) CLUSTER (FESn)
3o: FE2/S2 (INORGANIC) CLUSTER (FESo)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
FE2
3
Ligand/Ion
FE (II) ION
3
FES
3
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
[
close Hetero Component info
]
Sites
(10, 10)
Info
All Sites
01: CC6 (SOFTWARE)
02: CC7 (SOFTWARE)
03: CC8 (SOFTWARE)
04: CC9 (SOFTWARE)
05: DC1 (SOFTWARE)
06: DC2 (SOFTWARE)
07: DC3 (SOFTWARE)
08: DC4 (SOFTWARE)
09: DC5 (SOFTWARE)
10: DC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
CC6
SOFTWARE
HIS G:189 , HIS G:193 , ASP G:337 , HOH G:1563 , HOH G:1759
BINDING SITE FOR RESIDUE FE2 G 501
02
CC7
SOFTWARE
CYS G:75 , HIS G:77 , ARG G:78 , VAL G:80 , CYS G:96 , HIS G:99 , TRP G:101
BINDING SITE FOR RESIDUE FES G 401
03
CC8
SOFTWARE
ARG G:194 , ASN G:195
BINDING SITE FOR RESIDUE CL G 395
04
CC9
SOFTWARE
HIS H:189 , HIS H:193 , ASP H:337 , HOH H:3162 , HOH H:3163
BINDING SITE FOR RESIDUE FE2 H 501
05
DC1
SOFTWARE
CYS H:75 , HIS H:77 , ARG H:78 , CYS H:96 , HIS H:99 , TRP H:101
BINDING SITE FOR RESIDUE FES H 401
06
DC2
SOFTWARE
ARG H:194 , ASN H:195
BINDING SITE FOR RESIDUE CL H 395
07
DC3
SOFTWARE
THR H:53
BINDING SITE FOR RESIDUE CL H 396
08
DC4
SOFTWARE
HIS I:189 , HIS I:193 , ASP I:337 , HOH I:397 , HOH I:2351
BINDING SITE FOR RESIDUE FE2 I 501
09
DC5
SOFTWARE
CYS I:75 , HIS I:77 , ARG I:78 , VAL I:80 , CYS I:96 , HIS I:99 , TRP I:101
BINDING SITE FOR RESIDUE FES I 401
10
DC6
SOFTWARE
ARG I:194 , ASN I:195
BINDING SITE FOR RESIDUE CL I 395
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
View:
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Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 30)
Info
All SCOP Domains
1a: SCOP_d3gcfa1 (A:16-148)
1b: SCOP_d3gcfj1 (J:16-148)
1c: SCOP_d3gcfk1 (K:16-148)
1d: SCOP_d3gcfl1 (L:16-148)
1e: SCOP_d3gcfm1 (M:16-148)
1f: SCOP_d3gcfn1 (N:16-148)
1g: SCOP_d3gcfo1 (O:16-148)
1h: SCOP_d3gcfb1 (B:16-148)
1i: SCOP_d3gcfc1 (C:16-148)
1j: SCOP_d3gcfd1 (D:16-148)
1k: SCOP_d3gcfe1 (E:16-148)
1l: SCOP_d3gcff1 (F:16-148)
1m: SCOP_d3gcfg1 (G:16-148)
1n: SCOP_d3gcfh1 (H:16-148)
1o: SCOP_d3gcfi1 (I:16-148)
2a: SCOP_d3gcfa2 (A:149-382)
2b: SCOP_d3gcfb2 (B:149-382)
2c: SCOP_d3gcfk2 (K:149-382)
2d: SCOP_d3gcfl2 (L:149-382)
2e: SCOP_d3gcfm2 (M:149-382)
2f: SCOP_d3gcfn2 (N:149-382)
2g: SCOP_d3gcfo2 (O:149-382)
2h: SCOP_d3gcfc2 (C:149-382)
2i: SCOP_d3gcfd2 (D:149-382)
2j: SCOP_d3gcfe2 (E:149-382)
2k: SCOP_d3gcff2 (F:149-382)
2l: SCOP_d3gcfg2 (G:149-382)
2m: SCOP_d3gcfh2 (H:149-382)
2n: SCOP_d3gcfi2 (I:149-382)
2o: SCOP_d3gcfj2 (J:149-382)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
ISP domain
(115)
Superfamily
:
ISP domain
(115)
Family
:
automated matches
(22)
Protein domain
:
automated matches
(22)
Nocardioides aromaticivorans [TaxId: 200618]
(2)
1a
d3gcfa1
A:16-148
1b
d3gcfj1
J:16-148
1c
d3gcfk1
K:16-148
1d
d3gcfl1
L:16-148
1e
d3gcfm1
M:16-148
1f
d3gcfn1
N:16-148
1g
d3gcfo1
O:16-148
1h
d3gcfb1
B:16-148
1i
d3gcfc1
C:16-148
1j
d3gcfd1
D:16-148
1k
d3gcfe1
E:16-148
1l
d3gcff1
F:16-148
1m
d3gcfg1
G:16-148
1n
d3gcfh1
H:16-148
1o
d3gcfi1
I:16-148
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
TBP-like
(289)
Superfamily
:
Bet v1-like
(158)
Family
:
automated matches
(39)
Protein domain
:
automated matches
(39)
Nocardioides aromaticivorans [TaxId: 200618]
(1)
2a
d3gcfa2
A:149-382
2b
d3gcfb2
B:149-382
2c
d3gcfk2
K:149-382
2d
d3gcfl2
L:149-382
2e
d3gcfm2
M:149-382
2f
d3gcfn2
N:149-382
2g
d3gcfo2
O:149-382
2h
d3gcfc2
C:149-382
2i
d3gcfd2
D:149-382
2j
d3gcfe2
E:149-382
2k
d3gcff2
F:149-382
2l
d3gcfg2
G:149-382
2m
d3gcfh2
H:149-382
2n
d3gcfi2
I:149-382
2o
d3gcfj2
J:149-382
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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