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3GCF
Asym. Unit
Info
Asym.Unit (979 KB)
Biol.Unit 1 (207 KB)
Biol.Unit 2 (206 KB)
Biol.Unit 3 (204 KB)
Biol.Unit 4 (203 KB)
Biol.Unit 5 (206 KB)
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(1)
Title
:
TERMINAL OXYGENASE OF CARBAZOLE 1,9A-DIOXYGENASE FROM NOCARDIOIDES AROMATICIVORANS IC177
Authors
:
K. Inoue, H. Nojiri
Date
:
22 Feb 09 (Deposition) - 15 Sep 09 (Release) - 15 Sep 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Biol. Unit 3: G,H,I (1x)
Biol. Unit 4: J,K,L (1x)
Biol. Unit 5: M,N,O (1x)
Keywords
:
Rieske Oxygenase, 2Fe-2S, Dioxygenase, Carbazole, Electron Transfer, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Inoue, Y. Ashikawa, T. Umeda, M. Abo, J. Katsuki, Y. Usami, H. Noguchi, Z. Fujimoto, T. Terada, H. Yamane, H. Nojiri
Specific Interactions Between The Ferredoxin And Terminal Oxygenase Components Of A Class Iib Rieske Nonheme Iron Oxygenase, Carbazole 1, 9A-Dioxygenase.
J. Mol. Biol. V. 392 436 2009
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 64)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1aa: CHLORIDE ION (CLaa)
1ab: CHLORIDE ION (CLab)
1ac: CHLORIDE ION (CLac)
1ad: CHLORIDE ION (CLad)
1ae: CHLORIDE ION (CLae)
1af: CHLORIDE ION (CLaf)
1ag: CHLORIDE ION (CLag)
1ah: CHLORIDE ION (CLah)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
1i: CHLORIDE ION (CLi)
1j: CHLORIDE ION (CLj)
1k: CHLORIDE ION (CLk)
1l: CHLORIDE ION (CLl)
1m: CHLORIDE ION (CLm)
1n: CHLORIDE ION (CLn)
1o: CHLORIDE ION (CLo)
1p: CHLORIDE ION (CLp)
1q: CHLORIDE ION (CLq)
1r: CHLORIDE ION (CLr)
1s: CHLORIDE ION (CLs)
1t: CHLORIDE ION (CLt)
1u: CHLORIDE ION (CLu)
1v: CHLORIDE ION (CLv)
1w: CHLORIDE ION (CLw)
1x: CHLORIDE ION (CLx)
1y: CHLORIDE ION (CLy)
1z: CHLORIDE ION (CLz)
2a: FE (II) ION (FE2a)
2b: FE (II) ION (FE2b)
2c: FE (II) ION (FE2c)
2d: FE (II) ION (FE2d)
2e: FE (II) ION (FE2e)
2f: FE (II) ION (FE2f)
2g: FE (II) ION (FE2g)
2h: FE (II) ION (FE2h)
2i: FE (II) ION (FE2i)
2j: FE (II) ION (FE2j)
2k: FE (II) ION (FE2k)
2l: FE (II) ION (FE2l)
2m: FE (II) ION (FE2m)
2n: FE (II) ION (FE2n)
2o: FE (II) ION (FE2o)
3a: FE2/S2 (INORGANIC) CLUSTER (FESa)
3b: FE2/S2 (INORGANIC) CLUSTER (FESb)
3c: FE2/S2 (INORGANIC) CLUSTER (FESc)
3d: FE2/S2 (INORGANIC) CLUSTER (FESd)
3e: FE2/S2 (INORGANIC) CLUSTER (FESe)
3f: FE2/S2 (INORGANIC) CLUSTER (FESf)
3g: FE2/S2 (INORGANIC) CLUSTER (FESg)
3h: FE2/S2 (INORGANIC) CLUSTER (FESh)
3i: FE2/S2 (INORGANIC) CLUSTER (FESi)
3j: FE2/S2 (INORGANIC) CLUSTER (FESj)
3k: FE2/S2 (INORGANIC) CLUSTER (FESk)
3l: FE2/S2 (INORGANIC) CLUSTER (FESl)
3m: FE2/S2 (INORGANIC) CLUSTER (FESm)
3n: FE2/S2 (INORGANIC) CLUSTER (FESn)
3o: FE2/S2 (INORGANIC) CLUSTER (FESo)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
34
Ligand/Ion
CHLORIDE ION
2
FE2
15
Ligand/Ion
FE (II) ION
3
FES
15
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
[
close Hetero Component info
]
Sites
(58, 58)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:189 , HIS A:193 , ASP A:337 , HOH A:3146 , HOH A:3147
BINDING SITE FOR RESIDUE FE2 A 501
02
AC2
SOFTWARE
CYS A:75 , HIS A:77 , ARG A:78 , VAL A:80 , CYS A:96 , HIS A:99 , TRP A:101
BINDING SITE FOR RESIDUE FES A 401
03
AC3
SOFTWARE
ARG A:23 , HOH A:1516
BINDING SITE FOR RESIDUE CL A 395
04
AC4
SOFTWARE
ARG A:194 , ASN A:195
BINDING SITE FOR RESIDUE CL A 397
05
AC5
SOFTWARE
HIS B:189 , HIS B:193 , ASP B:337 , HOH B:3149 , HOH B:3150
BINDING SITE FOR RESIDUE FE2 B 501
06
AC6
SOFTWARE
CYS B:75 , HIS B:77 , ARG B:78 , VAL B:80 , CYS B:96 , HIS B:99 , TRP B:101
BINDING SITE FOR RESIDUE FES B 401
07
AC7
SOFTWARE
ARG B:23
BINDING SITE FOR RESIDUE CL B 395
08
AC8
SOFTWARE
ARG B:194
BINDING SITE FOR RESIDUE CL B 397
09
AC9
SOFTWARE
HIS C:189 , HIS C:193 , ASP C:337 , HOH C:3152 , HOH C:3153
BINDING SITE FOR RESIDUE FE2 C 501
10
BC1
SOFTWARE
CYS C:75 , HIS C:77 , ARG C:78 , CYS C:96 , HIS C:99 , TRP C:101
BINDING SITE FOR RESIDUE FES C 401
11
BC2
SOFTWARE
ARG C:23
BINDING SITE FOR RESIDUE CL C 395
12
BC3
SOFTWARE
HIS D:189 , HIS D:193 , ASP D:337 , HOH D:3155
BINDING SITE FOR RESIDUE FE2 D 501
13
BC4
SOFTWARE
CYS D:75 , HIS D:77 , ARG D:78 , CYS D:96 , HIS D:99 , TRP D:101
BINDING SITE FOR RESIDUE FES D 401
14
BC5
SOFTWARE
ARG D:194 , ASN D:195
BINDING SITE FOR RESIDUE CL D 395
15
BC6
SOFTWARE
LYS D:227 , ARG D:376
BINDING SITE FOR RESIDUE CL D 396
16
BC7
SOFTWARE
HIS E:189 , HIS E:193 , ASP E:337 , HOH E:3095 , HOH E:3157
BINDING SITE FOR RESIDUE FE2 E 501
17
BC8
SOFTWARE
CYS E:75 , HIS E:77 , ARG E:78 , VAL E:80 , CYS E:96 , HIS E:99 , TRP E:101
BINDING SITE FOR RESIDUE FES E 401
18
BC9
SOFTWARE
ARG E:194 , ASN E:195
BINDING SITE FOR RESIDUE CL E 395
19
CC1
SOFTWARE
LYS E:227 , ARG E:376
BINDING SITE FOR RESIDUE CL E 396
20
CC2
SOFTWARE
HIS F:189 , HIS F:193 , ASP F:337 , HOH F:1730 , HOH F:3159
BINDING SITE FOR RESIDUE FE2 F 501
21
CC3
SOFTWARE
CYS F:75 , HIS F:77 , ARG F:78 , CYS F:96 , HIS F:99 , TRP F:101
BINDING SITE FOR RESIDUE FES F 401
22
CC4
SOFTWARE
ARG F:194 , ASN F:195
BINDING SITE FOR RESIDUE CL F 395
23
CC5
SOFTWARE
LYS F:227 , ARG F:376
BINDING SITE FOR RESIDUE CL F 396
24
CC6
SOFTWARE
HIS G:189 , HIS G:193 , ASP G:337 , HOH G:1563 , HOH G:1759
BINDING SITE FOR RESIDUE FE2 G 501
25
CC7
SOFTWARE
CYS G:75 , HIS G:77 , ARG G:78 , VAL G:80 , CYS G:96 , HIS G:99 , TRP G:101
BINDING SITE FOR RESIDUE FES G 401
26
CC8
SOFTWARE
ARG G:194 , ASN G:195
BINDING SITE FOR RESIDUE CL G 395
27
CC9
SOFTWARE
HIS H:189 , HIS H:193 , ASP H:337 , HOH H:3162 , HOH H:3163
BINDING SITE FOR RESIDUE FE2 H 501
28
DC1
SOFTWARE
CYS H:75 , HIS H:77 , ARG H:78 , CYS H:96 , HIS H:99 , TRP H:101
BINDING SITE FOR RESIDUE FES H 401
29
DC2
SOFTWARE
ARG H:194 , ASN H:195
BINDING SITE FOR RESIDUE CL H 395
30
DC3
SOFTWARE
THR H:53
BINDING SITE FOR RESIDUE CL H 396
31
DC4
SOFTWARE
HIS I:189 , HIS I:193 , ASP I:337 , HOH I:397 , HOH I:2351
BINDING SITE FOR RESIDUE FE2 I 501
32
DC5
SOFTWARE
CYS I:75 , HIS I:77 , ARG I:78 , VAL I:80 , CYS I:96 , HIS I:99 , TRP I:101
BINDING SITE FOR RESIDUE FES I 401
33
DC6
SOFTWARE
ARG I:194 , ASN I:195
BINDING SITE FOR RESIDUE CL I 395
34
DC7
SOFTWARE
HIS J:189 , HIS J:193 , ASP J:337 , HOH J:504 , HOH J:3165
BINDING SITE FOR RESIDUE FE2 J 501
35
DC8
SOFTWARE
CYS J:75 , HIS J:77 , ARG J:78 , CYS J:96 , HIS J:99 , TRP J:101
BINDING SITE FOR RESIDUE FES J 401
36
DC9
SOFTWARE
LYS J:227 , ARG J:376
BINDING SITE FOR RESIDUE CL J 396
37
EC1
SOFTWARE
HIS K:189 , HIS K:193 , ASP K:337 , HOH K:2268 , HOH K:3168
BINDING SITE FOR RESIDUE FE2 K 501
38
EC2
SOFTWARE
CYS K:75 , HIS K:77 , ARG K:78 , VAL K:80 , CYS K:96 , HIS K:99 , TRP K:101
BINDING SITE FOR RESIDUE FES K 401
39
EC3
SOFTWARE
LYS K:227 , ARG K:376
BINDING SITE FOR RESIDUE CL K 395
40
EC4
SOFTWARE
ASN K:195
BINDING SITE FOR RESIDUE CL K 396
41
EC5
SOFTWARE
HIS L:189 , HIS L:193 , ASP L:337 , HOH L:1714 , HOH L:3169
BINDING SITE FOR RESIDUE FE2 L 501
42
EC6
SOFTWARE
CYS L:75 , HIS L:77 , ARG L:78 , VAL L:80 , CYS L:96 , HIS L:99 , TRP L:101
BINDING SITE FOR RESIDUE FES L 401
43
EC7
SOFTWARE
LYS L:227 , ARG L:376
BINDING SITE FOR RESIDUE CL L 396
44
EC8
SOFTWARE
HIS M:189 , HIS M:193 , ASP M:337 , HOH M:3170
BINDING SITE FOR RESIDUE FE2 M 501
45
EC9
SOFTWARE
CYS M:75 , HIS M:77 , ARG M:78 , CYS M:96 , HIS M:99 , TRP M:101
BINDING SITE FOR RESIDUE FES M 401
46
FC1
SOFTWARE
ARG M:376
BINDING SITE FOR RESIDUE CL M 395
47
FC2
SOFTWARE
ASN M:195
BINDING SITE FOR RESIDUE CL M 396
48
FC3
SOFTWARE
LYS M:260 , HOH M:3481
BINDING SITE FOR RESIDUE CL M 397
49
FC4
SOFTWARE
HIS N:189 , HIS N:193 , ASP N:337 , HOH N:1866 , HOH N:3173
BINDING SITE FOR RESIDUE FE2 N 501
50
FC5
SOFTWARE
CYS N:75 , HIS N:77 , ARG N:78 , CYS N:96 , HIS N:99 , TRP N:101
BINDING SITE FOR RESIDUE FES N 401
51
FC6
SOFTWARE
ARG N:376
BINDING SITE FOR RESIDUE CL N 395
52
FC7
SOFTWARE
ASN N:195
BINDING SITE FOR RESIDUE CL N 396
53
FC8
SOFTWARE
LYS N:260
BINDING SITE FOR RESIDUE CL N 397
54
FC9
SOFTWARE
THR N:53
BINDING SITE FOR RESIDUE CL N 398
55
GC1
SOFTWARE
HIS O:189 , HIS O:193 , ASP O:337 , HOH O:1776 , HOH O:3176
BINDING SITE FOR RESIDUE FE2 O 501
56
GC2
SOFTWARE
CYS O:75 , HIS O:77 , ARG O:78 , VAL O:80 , CYS O:96 , HIS O:99 , TRP O:101
BINDING SITE FOR RESIDUE FES O 401
57
GC3
SOFTWARE
ARG O:376
BINDING SITE FOR RESIDUE CL O 395
58
GC4
SOFTWARE
ASN O:195
BINDING SITE FOR RESIDUE CL O 396
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 30)
Info
All SCOP Domains
1a: SCOP_d3gcfa1 (A:16-148)
1b: SCOP_d3gcfj1 (J:16-148)
1c: SCOP_d3gcfk1 (K:16-148)
1d: SCOP_d3gcfl1 (L:16-148)
1e: SCOP_d3gcfm1 (M:16-148)
1f: SCOP_d3gcfn1 (N:16-148)
1g: SCOP_d3gcfo1 (O:16-148)
1h: SCOP_d3gcfb1 (B:16-148)
1i: SCOP_d3gcfc1 (C:16-148)
1j: SCOP_d3gcfd1 (D:16-148)
1k: SCOP_d3gcfe1 (E:16-148)
1l: SCOP_d3gcff1 (F:16-148)
1m: SCOP_d3gcfg1 (G:16-148)
1n: SCOP_d3gcfh1 (H:16-148)
1o: SCOP_d3gcfi1 (I:16-148)
2a: SCOP_d3gcfa2 (A:149-382)
2b: SCOP_d3gcfb2 (B:149-382)
2c: SCOP_d3gcfk2 (K:149-382)
2d: SCOP_d3gcfl2 (L:149-382)
2e: SCOP_d3gcfm2 (M:149-382)
2f: SCOP_d3gcfn2 (N:149-382)
2g: SCOP_d3gcfo2 (O:149-382)
2h: SCOP_d3gcfc2 (C:149-382)
2i: SCOP_d3gcfd2 (D:149-382)
2j: SCOP_d3gcfe2 (E:149-382)
2k: SCOP_d3gcff2 (F:149-382)
2l: SCOP_d3gcfg2 (G:149-382)
2m: SCOP_d3gcfh2 (H:149-382)
2n: SCOP_d3gcfi2 (I:149-382)
2o: SCOP_d3gcfj2 (J:149-382)
View:
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
ISP domain
(115)
Superfamily
:
ISP domain
(115)
Family
:
automated matches
(22)
Protein domain
:
automated matches
(22)
Nocardioides aromaticivorans [TaxId: 200618]
(2)
1a
d3gcfa1
A:16-148
1b
d3gcfj1
J:16-148
1c
d3gcfk1
K:16-148
1d
d3gcfl1
L:16-148
1e
d3gcfm1
M:16-148
1f
d3gcfn1
N:16-148
1g
d3gcfo1
O:16-148
1h
d3gcfb1
B:16-148
1i
d3gcfc1
C:16-148
1j
d3gcfd1
D:16-148
1k
d3gcfe1
E:16-148
1l
d3gcff1
F:16-148
1m
d3gcfg1
G:16-148
1n
d3gcfh1
H:16-148
1o
d3gcfi1
I:16-148
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
TBP-like
(289)
Superfamily
:
Bet v1-like
(158)
Family
:
automated matches
(39)
Protein domain
:
automated matches
(39)
Nocardioides aromaticivorans [TaxId: 200618]
(1)
2a
d3gcfa2
A:149-382
2b
d3gcfb2
B:149-382
2c
d3gcfk2
K:149-382
2d
d3gcfl2
L:149-382
2e
d3gcfm2
M:149-382
2f
d3gcfn2
N:149-382
2g
d3gcfo2
O:149-382
2h
d3gcfc2
C:149-382
2i
d3gcfd2
D:149-382
2j
d3gcfe2
E:149-382
2k
d3gcff2
F:149-382
2l
d3gcfg2
G:149-382
2m
d3gcfh2
H:149-382
2n
d3gcfi2
I:149-382
2o
d3gcfj2
J:149-382
[
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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all PFAM domains
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Asym.Unit (979 KB)
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Biol.Unit 1 (207 KB)
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Biol.Unit 2 (206 KB)
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Biol.Unit 3 (204 KB)
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