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3GCB
Asym. Unit
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Asym.Unit (90 KB)
Biol.Unit 1 (495 KB)
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(1)
Title
:
GAL6 (YEAST BLEOMYCIN HYDROLASE) MUTANT C73A/DELTAK454
Authors
:
L. Joshua-Tor, W. Zheng, S. A. Johnston
Date
:
27 Feb 98 (Deposition) - 21 Oct 98 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.87
Chains
:
Asym. Unit : A
Biol. Unit 1: A (6x)
Keywords
:
Bleomycin Hydrolase, Peptidase, Protease, Dna-Binding Protein, Self- Compartmentalizing Protease, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. Zheng, S. A. Johnston, L. Joshua-Tor
The Unusual Active Site Of Gal6/Bleomycin Hydrolase Can Act As A Carboxypeptidase, Aminopeptidase, And Peptide Ligase.
Cell(Cambridge, Mass. ) V. 93 103 1998
(for further references see the
PDB file header
)
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Hetero Components
(2, 7)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GOL
2
Ligand/Ion
GLYCEROL
2
SO4
5
Ligand/Ion
SULFATE ION
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Sites
(9, 9)
Info
All Sites
1: A73 (UNKNOWN)
2: AC1 (SOFTWARE)
3: AC2 (SOFTWARE)
4: AC3 (SOFTWARE)
5: AC4 (SOFTWARE)
6: AC5 (SOFTWARE)
7: AC6 (SOFTWARE)
8: AC7 (SOFTWARE)
9: NUL (UNKNOWN)
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No.
Name
Evidence
Residues
Description
1
A73
UNKNOWN
ALA A:73
NUCLEOPHILIC CYSTEINE MUTATED TO ALANINE.
2
AC1
SOFTWARE
ASN A:66 , GLY A:395 , LYS A:396 , HOH A:812 , HOH A:857 , HOH A:907
BINDING SITE FOR RESIDUE SO4 A 1101
3
AC2
SOFTWARE
ILE A:126 , ARG A:192 , TYR A:362 , HOH A:566 , HOH A:632
BINDING SITE FOR RESIDUE SO4 A 1102
4
AC3
SOFTWARE
ASN A:273 , TYR A:279 , ASP A:303 , ASN A:304 , HOH A:550 , HOH A:639
BINDING SITE FOR RESIDUE SO4 A 1103
5
AC4
SOFTWARE
LYS A:175 , SER A:178 , LYS A:329 , HOH A:543
BINDING SITE FOR RESIDUE SO4 A 1104
6
AC5
SOFTWARE
ARG A:44 , GLU A:341 , HOH A:677 , HOH A:678
BINDING SITE FOR RESIDUE SO4 A 1105
7
AC6
SOFTWARE
GLN A:81 , LEU A:82 , ASN A:85 , LYS A:262 , ARG A:314 , LYS A:319 , ASP A:421 , HOH A:595 , HOH A:753
BINDING SITE FOR RESIDUE GOL A 1001
8
AC7
SOFTWARE
ARG A:129 , GLN A:132 , TYR A:133 , TRP A:446 , HOH A:780 , HOH A:783
BINDING SITE FOR RESIDUE GOL A 1002
9
NUL
UNKNOWN
HIS A:369 , ASN A:392
CATALYTIC RESIDUES.
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: THIOL_PROTEASE_CYS (A:67-78)
2: THIOL_PROTEASE_HIS (A:367-377)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
THIOL_PROTEASE_CYS
PS00139
Eukaryotic thiol (cysteine) proteases cysteine active site.
BLH1_YEAST
96-107
1
A:67-78
2
THIOL_PROTEASE_HIS
PS00639
Eukaryotic thiol (cysteine) proteases histidine active site.
BLH1_YEAST
396-406
1
A:367-377
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3gcba_ (A:)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cysteine proteinases
(392)
Superfamily
:
Cysteine proteinases
(392)
Family
:
Papain-like
(200)
Protein domain
:
Bleomycin hydrolase
(11)
Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]
(9)
1a
d3gcba_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_3gcbA01 (A:54-453)
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Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Cathepsin B; Chain A
(207)
Homologous Superfamily
:
Cysteine proteinases
(207)
Baker's yeast (Saccharomyces cerevisiae)
(9)
1a
3gcbA01
A:54-453
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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Asym.Unit (90 KB)
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