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3GC8
Biol. Unit 1
Info
Asym.Unit (123 KB)
Biol.Unit 1 (60 KB)
Biol.Unit 2 (60 KB)
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(1)
Title
:
THE STRUCTURE OF P38BETA C162S IN COMPLEX WITH A DIHYDROQUINAZOLINONE
Authors
:
G. Scapin, S. B. Patel
Date
:
21 Feb 09 (Deposition) - 21 Jul 09 (Release) - 21 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Serine/Thronine Kinase, Drug Design, Selectivity, Atp-Binding, Kinase, Nucleotide-Binding, Phosphoprotein, Serine/Threonine-Protein Kinase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. B. Patel, P. M. Cameron, S. J. O'Keefe, B. Frantz-Wattley, J. Thompson, E. A. O'Neill, T. Tennis, L. Liu, J. W. Becker, G. Scapin
The Three-Dimensional Structure Of Map Kinase P38Beta: Different Features Of The Atp-Binding Site In P38Beta Compared With P38Alpha.
Acta Crystallogr. , Sect. D V. 65 777 2009
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: 5-(2-CHLORO-4-FLUOROPHENYL)-1-(2,6... (B45a)
1b: 5-(2-CHLORO-4-FLUOROPHENYL)-1-(2,6... (B45b)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
3a: NICKEL (II) ION (NIa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
B45
1
Ligand/Ion
5-(2-CHLORO-4-FLUOROPHENYL)-1-(2,6-DICHLOROPHENYL)-7-[1-(1-METHYLETHYL)PIPERIDIN-4-YL]-3,4-DIHYDROQUINAZOLIN-2(1H)-ONE
2
NA
-1
Ligand/Ion
SODIUM ION
3
NI
-1
Ligand/Ion
NICKEL (II) ION
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:64 , GLU A:81 , ASP A:316
BINDING SITE FOR RESIDUE NA A 601
2
AC2
SOFTWARE
VAL A:30 , TYR A:35 , VAL A:38 , ALA A:51 , VAL A:52 , LYS A:53 , LEU A:104 , THR A:106 , THR A:107 , LEU A:108 , MET A:109 , GLY A:110 , ALA A:111 , SER A:154 , ALA A:157 , LEU A:167
BINDING SITE FOR RESIDUE B45 A 365
3
AC3
SOFTWARE
HIS A:199 , GLU B:245 , ASP B:292 , ASP B:294
BINDING SITE FOR RESIDUE NI B 602
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_042264 (A221V, chain A, )
2: VAR_025176 (R275H, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_042264
A
221
V
MK11_HUMAN
Unclassified
---
A
A
221
V
2
UniProt
VAR_025176
R
275
H
MK11_HUMAN
Polymorphism
33932986
A
R
275
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:30-54)
2: MAPK (A:59-161)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
MK11_HUMAN
30-54
1
A:30-54
-
2
MAPK
PS01351
MAP kinase signature.
MK11_HUMAN
59-162
1
A:59-161
-
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3gc8a_ (A:)
1b: SCOP_d3gc8b_ (B:)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
automated matches
(542)
Human (Homo sapiens) [TaxId: 9606]
(452)
1a
d3gc8a_
A:
1b
d3gc8b_
B:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_3gc8A01 (A:5-110,A:320-349)
1b: CATH_3gc8B01 (B:5-110,B:320-349)
2a: CATH_3gc8A02 (A:111-319)
2b: CATH_3gc8B02 (B:111-319)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Human (Homo sapiens)
(1036)
1a
3gc8A01
A:5-110,A:320-349
1b
3gc8B01
B:5-110,B:320-349
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Transferase(Phosphotransferase); domain 1
(1379)
Homologous Superfamily
:
Transferase(Phosphotransferase) domain 1
(1379)
Human (Homo sapiens)
(1049)
2a
3gc8A02
A:111-319
2b
3gc8B02
B:111-319
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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Asym.Unit (123 KB)
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