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3GAI
Asym. Unit
Info
Asym.Unit (46 KB)
Biol.Unit 1 (112 KB)
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(1)
Title
:
STRUCTURE OF A F112A VARIANT PDUO-TYPE ATP:CORRINOID ADENOSYLTRANSFERASE FROM LACTOBACILLUS REUTERI COMPLEXED WITH COBALAMIN AND ATP
Authors
:
M. St Maurice, P. E. Mera, J. C. Escalante-Semerena, I. Rayment
Date
:
17 Feb 09 (Deposition) - 07 Jul 09 (Release) - 24 Oct 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.48
Chains
:
Asym. Unit : A
Biol. Unit 1: A (3x)
Keywords
:
Transferase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
P. E. Mera, M. St Maurice, I. Rayment, J. C. Escalante-Semerena
Residue Phe112 Of The Human-Type Corrinoid Adenosyltransferase (Pduo) Enzyme Of Lactobacillus Reuteri Is Critical To The Formation Of The Four-Coordinate Co(Ii) Corrinoid Substrate And To The Activity Of The Enzyme.
Biochemistry V. 48 3138 2009
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Hetero Components
(6, 10)
Info
All Hetero Components
1a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
2a: COBALAMIN (B12a)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
5a: POTASSIUM ION (Ka)
5b: POTASSIUM ION (Kb)
6a: MAGNESIUM ION (MGa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ATP
1
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
2
B12
1
Ligand/Ion
COBALAMIN
3
CL
2
Ligand/Ion
CHLORIDE ION
4
GOL
3
Ligand/Ion
GLYCEROL
5
K
2
Ligand/Ion
POTASSIUM ION
6
MG
1
Ligand/Ion
MAGNESIUM ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:5 , LYS A:6 , ASN A:7 , GLY A:8 , THR A:13 , ARG A:14 , LYS A:23 , VAL A:28 , TYR A:31 , ARG A:132 , GLU A:135 , ARG A:136 , ASN A:156 , MG A:189 , K A:190 , HOH A:202 , HOH A:203 , HOH A:206 , HOH A:221 , B12 A:800
BINDING SITE FOR RESIDUE ATP A 999
02
AC2
SOFTWARE
LYS A:2 , ILE A:3 , THR A:5 , ARG A:14 , PHE A:67 , GLY A:70 , HIS A:71 , ALA A:74 , LYS A:111 , ALA A:112 , ILE A:113 , ARG A:128 , ARG A:132 , SER A:159 , ASP A:160 , PHE A:163 , K A:190 , CL A:192 , HOH A:197 , HOH A:207 , HOH A:220 , HOH A:222 , HOH A:277 , HOH A:288 , HOH A:313 , HOH A:315 , ATP A:999
BINDING SITE FOR RESIDUE B12 A 800
03
AC3
SOFTWARE
ASN A:156 , HOH A:203 , HOH A:206 , ATP A:999
BINDING SITE FOR RESIDUE MG A 189
04
AC4
SOFTWARE
ILE A:3 , ASP A:160 , B12 A:800 , ATP A:999
BINDING SITE FOR RESIDUE K A 190
05
AC5
SOFTWARE
PRO A:76 , ALA A:77 , ASP A:79 , HIS A:82 , HOH A:260 , HOH A:264
BINDING SITE FOR RESIDUE K A 191
06
AC6
SOFTWARE
LYS A:111 , ALA A:112 , B12 A:800
BINDING SITE FOR RESIDUE CL A 192
07
AC7
SOFTWARE
ARG A:81 , PRO A:107 , ARG A:167 , ASP A:177 , HOH A:254
BINDING SITE FOR RESIDUE CL A 193
08
AC8
SOFTWARE
GLU A:61 , LEU A:65 , GLN A:90 , TRP A:94
BINDING SITE FOR RESIDUE GOL A 888
09
AC9
SOFTWARE
ASN A:24 , ALA A:29 , ARG A:136 , GLN A:137 , GLN A:140 , HOH A:250
BINDING SITE FOR RESIDUE GOL A 889
10
BC1
SOFTWARE
ASP A:78 , ASP A:79 , GLU A:80 , ALA A:108 , VAL A:109 , LYS A:110 , LYS A:111 , HOH A:300
BINDING SITE FOR RESIDUE GOL A 890
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3gaia_ (A:)
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
Ferritin-like
(533)
Superfamily
:
Cobalamin adenosyltransferase-like
(21)
Family
:
automated matches
(17)
Protein domain
:
automated matches
(17)
Lactobacillus reuteri [TaxId: 1598]
(9)
1a
d3gaia_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_3gaiA01 (A:12-182)
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Organisms
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(
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Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Hypothetical Protein Ta1238; Chain: A;
(20)
Homologous Superfamily
:
[code=1.20.1200.10, no name defined]
(20)
Lactobacillus reuteri. Organism_taxid: 1598. Strain: crl1098.
(6)
1a
3gaiA01
A:12-182
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Pfam Domains
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Chain A
Asymmetric Unit 1
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