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3GA6
Biol. Unit 2
Info
Asym.Unit (210 KB)
Biol.Unit 1 (103 KB)
Biol.Unit 2 (104 KB)
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(1)
Title
:
MTH0212 IN COMPLEX WITH TWO DNA HELICES
Authors
:
K. Lakomek, A. Dickmanns, R. Ficner
Date
:
16 Feb 09 (Deposition) - 09 Mar 10 (Release) - 12 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,D,F,G,H
Biol. Unit 1: A,D,F (1x)
Biol. Unit 2: B,G,H (1x)
Keywords
:
Protein-Dna Complex, Twin, Disorder Of Dna, 3'-5' Exonuclease, Ap Endonuclease, 2'-Desoxyuridine Endonuclease, Hydrolase-Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Lakomek, A. Dickmanns, E. Ciirdaeva, L. Schomacher, R. Ficner
Crystal Structure Analysis Of Dna Uridine Endonuclease Mth212 Bound To Dna
J. Mol. Biol. V. 399 604 2010
(for further references see the
PDB file header
)
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: (DUa)
1b: (DUb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
2l: GLYCEROL (GOLl)
2m: GLYCEROL (GOLm)
2n: GLYCEROL (GOLn)
2o: GLYCEROL (GOLo)
2p: GLYCEROL (GOLp)
2q: GLYCEROL (GOLq)
2r: GLYCEROL (GOLr)
2s: GLYCEROL (GOLs)
3a: SODIUM ION (NAa)
4a: PHOSPHATE ION (PO4a)
4b: PHOSPHATE ION (PO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DU
-1
Mod. Residue
2
GOL
8
Ligand/Ion
GLYCEROL
3
NA
-1
Ligand/Ion
SODIUM ION
4
PO4
2
Ligand/Ion
PHOSPHATE ION
[
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC6 (SOFTWARE)
03: AC7 (SOFTWARE)
04: AC8 (SOFTWARE)
05: BC1 (SOFTWARE)
06: BC4 (SOFTWARE)
07: BC5 (SOFTWARE)
08: BC6 (SOFTWARE)
09: BC7 (SOFTWARE)
10: BC8 (SOFTWARE)
11: BC9 (SOFTWARE)
12: CC1 (SOFTWARE)
13: CC2 (SOFTWARE)
14: CC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
VAL A:1088 , ALA A:1131 , GLU A:1134 , ARG B:2090 , HOH B:9027
BINDING SITE FOR RESIDUE GOL A 7002
02
AC6
SOFTWARE
HOH A:459 , LYS A:1183 , GLU A:1186 , ASN A:1187 , GLU B:2054 , HOH B:9172
BINDING SITE FOR RESIDUE GOL A 7013
03
AC7
SOFTWARE
PRO A:1043 , GLU A:1044 , LEU A:1046 , ARG A:1051 , GLU B:2228 , GLU B:2229 , HOH B:9174
BINDING SITE FOR RESIDUE GOL A 7015
04
AC8
SOFTWARE
GLY A:1055 , TYR A:1056 , ARG A:1057 , LYS A:1076 , ASP B:2182 , GLU B:2186
BINDING SITE FOR RESIDUE GOL A 7020
05
BC1
SOFTWARE
ARG A:1090 , GLU A:1120 , LYS A:1123 , TYR A:1124 , GLU A:1127 , ARG B:2138
BINDING SITE FOR RESIDUE GOL A 7030
06
BC4
SOFTWARE
GLU B:2094 , GLU B:2120 , ARG B:2121 , HOH B:9353
BINDING SITE FOR RESIDUE GOL B 7003
07
BC5
SOFTWARE
GLY A:1087 , VAL A:1088 , GLU A:1089 , GLY B:2087 , VAL B:2088 , GLU B:2089 , ASP B:2092 , HOH B:9144 , HOH B:9194
BINDING SITE FOR RESIDUE GOL B 7011
08
BC6
SOFTWARE
GLU B:2158 , ILE B:2159 , LEU B:2161 , PRO B:2164 , PRO B:2200 , HOH B:9118 , HOH B:9167 , HOH B:9306
BINDING SITE FOR RESIDUE GOL B 7021
09
BC7
SOFTWARE
ASN B:2114 , LYS B:2116 , LYS B:2125 , ASN B:2153 , SER B:2171 , GLY B:2172 , LEU B:2221 , HOH B:9222
BINDING SITE FOR RESIDUE GOL B 7022
10
BC8
SOFTWARE
PRO B:2062 , GLU B:2084 , HOH B:9090 , HOH B:9109
BINDING SITE FOR RESIDUE GOL B 7027
11
BC9
SOFTWARE
SER B:2168 , ASN B:2169 , PRO B:2175 , HOH B:9014
BINDING SITE FOR RESIDUE GOL B 7032
12
CC1
SOFTWARE
ASP B:2191 , THR B:2192 , PHE B:2193 , ARG B:2220 , ASP B:2222 , TYR B:2223 , PHE B:2224 , TRP B:2238 , ILE B:2239 , ILE B:2251 , HOH B:9377
BINDING SITE FOR RESIDUE GOL B 7033
13
CC2
SOFTWARE
LEU B:2082 , ARG B:2083
BINDING SITE FOR RESIDUE PO4 B 7204
14
CC3
SOFTWARE
ASP B:2104 , LYS B:2233 , ILE B:2255 , GLU B:2256
BINDING SITE FOR RESIDUE PO4 B 7205
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
Info
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;
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Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3ga6a_ (A:)
1b: SCOP_d3ga6b_ (B:)
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Classes
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Protein Domains
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Organisms
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(
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Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
DNase I-like
(70)
Superfamily
:
DNase I-like
(70)
Family
:
automated matches
(26)
Protein domain
:
automated matches
(26)
Methanothermobacter thermautotrophicus [TaxId: 187420]
(15)
1a
d3ga6a_
A:
1b
d3ga6b_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Protein & NOT Site
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Chain B
Chain G
Chain H
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (210 KB)
Header - Asym.Unit
Biol.Unit 1 (103 KB)
Header - Biol.Unit 1
Biol.Unit 2 (104 KB)
Header - Biol.Unit 2
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