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3GA6
Biol. Unit 1
Info
Asym.Unit (210 KB)
Biol.Unit 1 (103 KB)
Biol.Unit 2 (104 KB)
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(1)
Title
:
MTH0212 IN COMPLEX WITH TWO DNA HELICES
Authors
:
K. Lakomek, A. Dickmanns, R. Ficner
Date
:
16 Feb 09 (Deposition) - 09 Mar 10 (Release) - 12 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,D,F,G,H
Biol. Unit 1: A,D,F (1x)
Biol. Unit 2: B,G,H (1x)
Keywords
:
Protein-Dna Complex, Twin, Disorder Of Dna, 3'-5' Exonuclease, Ap Endonuclease, 2'-Desoxyuridine Endonuclease, Hydrolase-Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Lakomek, A. Dickmanns, E. Ciirdaeva, L. Schomacher, R. Ficner
Crystal Structure Analysis Of Dna Uridine Endonuclease Mth212 Bound To Dna
J. Mol. Biol. V. 399 604 2010
(for further references see the
PDB file header
)
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Hetero Components
(1, 11)
Info
All Hetero Components
1a: (DUa)
1b: (DUb)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
2l: GLYCEROL (GOLl)
2m: GLYCEROL (GOLm)
2n: GLYCEROL (GOLn)
2o: GLYCEROL (GOLo)
2p: GLYCEROL (GOLp)
2q: GLYCEROL (GOLq)
2r: GLYCEROL (GOLr)
2s: GLYCEROL (GOLs)
3a: SODIUM ION (NAa)
4a: PHOSPHATE ION (PO4a)
4b: PHOSPHATE ION (PO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DU
-1
Mod. Residue
2
GOL
11
Ligand/Ion
GLYCEROL
3
NA
-1
Ligand/Ion
SODIUM ION
4
PO4
-1
Ligand/Ion
PHOSPHATE ION
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
VAL A:1088 , ALA A:1131 , GLU A:1134 , ARG B:2090 , HOH B:9027
BINDING SITE FOR RESIDUE GOL A 7002
02
AC2
SOFTWARE
MET A:1027 , GLU A:1054 , GLY A:1055 , LYS A:1076
BINDING SITE FOR RESIDUE GOL A 7004
03
AC3
SOFTWARE
LEU A:1004 , ILE A:1033 , VAL A:1077 , PHE A:1102 , NA A:7401
BINDING SITE FOR RESIDUE GOL A 7006
04
AC4
SOFTWARE
LYS A:1020 , ASP A:1242 , MET A:1244 , HOH A:9105
BINDING SITE FOR RESIDUE GOL A 7010
05
AC5
SOFTWARE
VAL A:1176 , ALA A:1179 , TRP A:1180 , LYS A:1183 , HOH A:9199 , HOH A:9219
BINDING SITE FOR RESIDUE GOL A 7012
06
AC6
SOFTWARE
HOH A:459 , LYS A:1183 , GLU A:1186 , ASN A:1187 , GLU B:2054 , HOH B:9172
BINDING SITE FOR RESIDUE GOL A 7013
07
AC7
SOFTWARE
PRO A:1043 , GLU A:1044 , LEU A:1046 , ARG A:1051 , GLU B:2228 , GLU B:2229 , HOH B:9174
BINDING SITE FOR RESIDUE GOL A 7015
08
AC8
SOFTWARE
GLY A:1055 , TYR A:1056 , ARG A:1057 , LYS A:1076 , ASP B:2182 , GLU B:2186
BINDING SITE FOR RESIDUE GOL A 7020
09
AC9
SOFTWARE
ASP A:1103 , ASP A:1104
BINDING SITE FOR RESIDUE GOL A 7024
10
BC1
SOFTWARE
ARG A:1090 , GLU A:1120 , LYS A:1123 , TYR A:1124 , GLU A:1127 , ARG B:2138
BINDING SITE FOR RESIDUE GOL A 7030
11
BC2
SOFTWARE
HOH A:443 , ILE A:1185 , TYR A:1189 , VAL A:1190 , ASP A:1191 , ARG A:1194 , HOH A:9268
BINDING SITE FOR RESIDUE GOL A 7031
12
BC3
SOFTWARE
ASP A:1032 , THR A:1075 , LYS A:1076 , VAL A:1077 , GOL A:7006 , HOH A:9008
BINDING SITE FOR RESIDUE NA A 7401
13
BC5
SOFTWARE
GLY A:1087 , VAL A:1088 , GLU A:1089 , GLY B:2087 , VAL B:2088 , GLU B:2089 , ASP B:2092 , HOH B:9144 , HOH B:9194
BINDING SITE FOR RESIDUE GOL B 7011
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3ga6a_ (A:)
1b: SCOP_d3ga6b_ (B:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
DNase I-like
(70)
Superfamily
:
DNase I-like
(70)
Family
:
automated matches
(26)
Protein domain
:
automated matches
(26)
Methanothermobacter thermautotrophicus [TaxId: 187420]
(15)
1a
d3ga6a_
A:
1b
d3ga6b_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Chain A
Chain D
Chain F
Asymmetric Unit 1
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Asym.Unit (210 KB)
Header - Asym.Unit
Biol.Unit 1 (103 KB)
Header - Biol.Unit 1
Biol.Unit 2 (104 KB)
Header - Biol.Unit 2
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