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3G8C
Biol. Unit 1
Info
Asym.Unit (163 KB)
Biol.Unit 1 (80 KB)
Biol.Unit 2 (82 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BIOTIN CARBOXYLASE IN COMPLEX WITH BIOTIN, BICARBONATE, ADP AND MG ION
Authors
:
C. Y. Chou, L. P. Yu, L. Tong
Date
:
12 Feb 09 (Deposition) - 03 Mar 09 (Release) - 01 Feb 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Atp-Grasp, Carboxylase, Biotin-Dependent, Fatty Acid Synthesis, Substrates Bound, Atp-Binding, Biotin, Fatty Acid Biosynthesis, Ligase, Lipid Synthesis, Nucleotide-Binding
(Keyword Search:
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Reference
:
C. Y. Chou, L. P. Yu, L. Tong
Crystal Structure Of Biotin Carboxylase In Complex With Substrates And Implications For Its Catalytic Mechanism.
J. Biol. Chem. V. 284 11690 2009
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
2a: BICARBONATE ION (BCTa)
2b: BICARBONATE ION (BCTb)
3a: BIOTIN (BTNa)
3b: BIOTIN (BTNb)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ADP
1
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
BCT
1
Ligand/Ion
BICARBONATE ION
3
BTN
1
Ligand/Ion
BIOTIN
4
MG
-1
Ligand/Ion
MAGNESIUM ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:116 , ILE A:157 , LYS A:159 , GLY A:163 , GLY A:164 , GLY A:165 , MET A:169 , GLU A:201 , LYS A:202 , TYR A:203 , LEU A:204 , HIS A:209 , GLN A:233 , HIS A:236 , GLU A:276 , LEU A:278 , GLU A:288 , ILE A:437 , HOH A:538 , HOH A:592 , HOH A:796 , MG A:1002
BINDING SITE FOR RESIDUE ADP A1000
2
AC2
SOFTWARE
GLU A:276 , GLU A:288 , HOH A:538 , HOH A:640 , ADP A:1000
BINDING SITE FOR RESIDUE MG A1002
3
AC3
SOFTWARE
TYR A:82 , PHE A:84 , ARG A:292 , VAL A:295 , ARG A:338 , TYR A:381 , ASP A:382 , HOH A:483 , HOH A:486 , HOH A:550 , HOH A:613 , HOH A:755 , BCT A:1006
BINDING SITE FOR RESIDUE BTN A1004
4
AC4
SOFTWARE
LYS A:238 , ASN A:290 , ARG A:292 , GLN A:294 , VAL A:295 , GLU A:296 , ARG A:338 , HOH A:756 , BTN A:1004
BINDING SITE FOR RESIDUE BCT A1006
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: BC (A:1-444)
2: CPSASE_1 (A:154-168)
3: CPSASE_2 (A:286-293)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
BC
PS50979
Biotin carboxylation domain profile.
ACCC_ECOLI
1-445
1
A:1-444
-
2
CPSASE_1
PS00866
Carbamoyl-phosphate synthase subdomain signature 1.
ACCC_ECOLI
154-168
1
A:154-168
-
3
CPSASE_2
PS00867
Carbamoyl-phosphate synthase subdomain signature 2.
ACCC_ECOLI
286-293
1
A:286-293
-
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d3g8ca3 (A:331-444)
1b: SCOP_d3g8cb3 (B:331-444)
2a: SCOP_d3g8ca2 (A:115-330)
2b: SCOP_d3g8cb2 (B:115-330)
3a: SCOP_d3g8ca1 (A:1-114)
3b: SCOP_d3g8cb1 (B:1-114)
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Protein Domains
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(
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Organisms
(
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(
)
Class
:
All beta proteins
(24004)
Fold
:
Barrel-sandwich hybrid
(185)
Superfamily
:
Rudiment single hybrid motif
(69)
Family
:
automated matches
(17)
Protein domain
:
automated matches
(17)
Escherichia coli K-12 [TaxId: 83333]
(2)
1a
d3g8ca3
A:331-444
1b
d3g8cb3
B:331-444
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
ATP-grasp
(191)
Superfamily
:
Glutathione synthetase ATP-binding domain-like
(158)
Family
:
BC ATP-binding domain-like
(53)
Protein domain
:
automated matches
(3)
Escherichia coli K-12 [TaxId: 83333]
(2)
2a
d3g8ca2
A:115-330
2b
d3g8cb2
B:115-330
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PreATP-grasp domain
(131)
Superfamily
:
PreATP-grasp domain
(131)
Family
:
automated matches
(45)
Protein domain
:
automated matches
(45)
Escherichia coli K-12 [TaxId: 83333]
(2)
3a
d3g8ca1
A:1-114
3b
d3g8cb1
B:1-114
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_3g8cA03 (A:131-203)
1b: CATH_3g8cB03 (B:131-203)
2a: CATH_3g8cA01 (A:1-85)
2b: CATH_3g8cB01 (B:1-85)
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Organisms
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)
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Dna Ligase; domain 1
(375)
Homologous Superfamily
:
ATP-grasp fold, A domain
(109)
Escherichia coli. Organism_taxid: 83333.
(2)
1a
3g8cA03
A:131-203
1b
3g8cB03
B:131-203
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.20, no name defined]
(85)
Escherichia coli. Organism_taxid: 83333.
(2)
2a
3g8cA01
A:1-85
2b
3g8cB01
B:1-85
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (163 KB)
Header - Asym.Unit
Biol.Unit 1 (80 KB)
Header - Biol.Unit 1
Biol.Unit 2 (82 KB)
Header - Biol.Unit 2
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