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3G6W
Asym. Unit
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Asym.Unit (148 KB)
Biol.Unit 1 (141 KB)
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(1)
Title
:
ASYMETRIC GTP BOUND STRUCTURE OF UPRTASE FROM SULFOLOBUS SOLFATARICUS CONTAINING PRPP-MG2+ IN HALF OF THE ACTIVE SITES AND R5P AND PPI IN THE OTHER HALF
Authors
:
A. Kadziola, S. Christoffersen
Date
:
09 Feb 09 (Deposition) - 01 Sep 09 (Release) - 20 Oct 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Allosteric Regulation, Tetramer, Sulfolobus Solfataricus, Phosphoribosyltransferase, Prpp, R5P, Gtp, Pop, Magnesium, Glycosyltransferase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Christoffersen, A. Kadziola, E. Johansson, M. Rasmussen, M. Willemoes, K. F. Jensen
Structural And Kinetic Studies Of The Allosteric Transition In Sulfolobus Solfataricus Uracil Phosphoribosyltransferase: Permanent Activation By Engineering Of The C-Terminus
J. Mol. Biol. V. 393 464 2009
(for further references see the
PDB file header
)
[
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Hetero Components
(5, 15)
Info
All Hetero Components
1a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
1b: GUANOSINE-5'-TRIPHOSPHATE (GTPb)
1c: GUANOSINE-5'-TRIPHOSPHATE (GTPc)
1d: GUANOSINE-5'-TRIPHOSPHATE (GTPd)
2a: 5-O-PHOSPHONO-ALPHA-D-RIBOFURANOSE (HSXa)
2b: 5-O-PHOSPHONO-ALPHA-D-RIBOFURANOSE (HSXb)
2c: 5-O-PHOSPHONO-ALPHA-D-RIBOFURANOSE (HSXc)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
4a: PYROPHOSPHATE 2- (POPa)
4b: PYROPHOSPHATE 2- (POPb)
5a: ALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC... (PRPa)
5b: ALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC... (PRPb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GTP
4
Ligand/Ion
GUANOSINE-5'-TRIPHOSPHATE
2
HSX
3
Ligand/Ion
5-O-PHOSPHONO-ALPHA-D-RIBOFURANOSE
3
MG
4
Ligand/Ion
MAGNESIUM ION
4
POP
2
Ligand/Ion
PYROPHOSPHATE 2-
5
PRP
2
Ligand/Ion
ALPHA-PHOSPHORIBOSYLPYROPHOSPHORIC ACID
[
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:30 , ARG A:34 , ARG A:37 , HOH A:219 , HOH A:229 , MG A:302 , ARG B:37 , LYS B:91 , PRO B:94 , ASN D:27 , LYS D:30 , ARG D:34 , GTP D:217
BINDING SITE FOR RESIDUE GTP A 301
02
AC2
SOFTWARE
HOH A:219 , HOH A:229 , GTP A:301 , GTP D:217
BINDING SITE FOR RESIDUE MG A 302
03
AC3
SOFTWARE
ARG A:80 , ALA A:81 , ARG A:105 , MET A:117 , ASP A:140 , MET A:142 , ALA A:144 , THR A:145 , ALA A:146 , SER A:147 , THR A:148 , GLY A:211 , HOH A:217 , HOH A:218 , HOH A:223 , MG A:305
BINDING SITE FOR RESIDUE PRP A 303
04
AC4
SOFTWARE
LEU A:79 , ARG A:80 , HOH A:217 , HOH A:218 , PRP A:303
BINDING SITE FOR RESIDUE MG A 305
05
AC5
SOFTWARE
LYS A:91 , PRO A:94 , LYS B:30 , ARG B:34 , ARG B:37 , HOH B:218 , MG B:302 , ILE C:26 , ASN C:27 , LYS C:30 , ARG C:34 , HOH D:218 , GTP D:301
BINDING SITE FOR RESIDUE GTP B 301
06
AC6
SOFTWARE
HOH B:218 , GTP B:301 , HOH D:218 , GTP D:301
BINDING SITE FOR RESIDUE MG B 302
07
AC7
SOFTWARE
ARG B:105 , ASP B:140 , MET B:142 , ALA B:144 , THR B:145 , ALA B:146 , SER B:147 , THR B:148 , HOH B:220 , POP B:307
BINDING SITE FOR RESIDUE HSX B 306
08
AC8
SOFTWARE
LEU B:79 , ARG B:80 , ALA B:81 , GLY B:211 , HSX B:306 , TYR D:123
BINDING SITE FOR RESIDUE POP B 307
09
AC9
SOFTWARE
ARG C:105 , ASP C:140 , MET C:142 , ALA C:144 , THR C:145 , ALA C:146 , SER C:147 , THR C:148 , POP C:307
BINDING SITE FOR RESIDUE HSX C 306
10
BC1
SOFTWARE
TYR A:123 , LYS A:125 , LEU C:79 , ARG C:80 , ALA C:103 , HSX C:306
BINDING SITE FOR RESIDUE POP C 307
11
BC2
SOFTWARE
ILE B:26 , ASN B:27 , LYS B:30 , ARG B:34 , HOH B:218 , GTP B:301 , MG B:302 , LYS C:30 , ARG C:34 , ARG D:37 , LYS D:91 , PRO D:94 , HOH D:218 , HOH D:225
BINDING SITE FOR RESIDUE GTP D 301
12
BC3
SOFTWARE
ILE A:26 , ASN A:27 , LYS A:30 , ARG A:34 , HOH A:219 , HOH A:220 , HOH A:229 , GTP A:301 , MG A:302 , ARG C:37 , LYS C:91 , PRO C:94 , LYS D:30 , ARG D:34
BINDING SITE FOR RESIDUE GTP D 217
13
BC4
SOFTWARE
LEU D:79 , ARG D:80 , ALA D:81 , SER D:104 , ARG D:105 , ASP D:140 , ILE D:143 , ALA D:144 , THR D:145 , ALA D:146 , SER D:147 , THR D:148 , HOH D:219 , HOH D:220 , HOH D:224 , MG D:304 , HSX D:306
BINDING SITE FOR RESIDUE PRP D 303
14
BC5
SOFTWARE
GLU D:107 , TYR D:202 , GLY D:208 , ASP D:209 , PRP D:303
BINDING SITE FOR RESIDUE HSX D 306
15
BC6
SOFTWARE
LEU D:79 , ARG D:80 , ALA D:81 , HOH D:219 , HOH D:220 , PRP D:303
BINDING SITE FOR RESIDUE MG D 304
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d3g6wa_ (A:)
1b: SCOP_d3g6wb_ (B:)
1c: SCOP_d3g6wc_ (C:)
1d: SCOP_d3g6wd_ (D:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PRTase-like
(145)
Superfamily
:
PRTase-like
(145)
Family
:
Phosphoribosyltransferases (PRTases)
(100)
Protein domain
:
Uracil PRTase, Upp
(14)
Sulfolobus solfataricus [TaxId: 2287]
(5)
1a
d3g6wa_
A:
1b
d3g6wb_
B:
1c
d3g6wc_
C:
1d
d3g6wd_
D:
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_3g6wB00 (B:2-216)
1b: CATH_3g6wC00 (C:2-216)
1c: CATH_3g6wA00 (A:2-216)
1d: CATH_3g6wD00 (D:2-216)
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.2020, no name defined]
(117)
Sulfolobus solfataricus. Organism_taxid: 2287.
(5)
1a
3g6wB00
B:2-216
1b
3g6wC00
C:2-216
1c
3g6wA00
A:2-216
1d
3g6wD00
D:2-216
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (148 KB)
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