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3G6J
Biol. Unit 1
Info
Asym.Unit (632 KB)
Biol.Unit 1 (319 KB)
Biol.Unit 2 (317 KB)
Biol.Unit 3 (77 KB)
Biol.Unit 4 (76 KB)
Biol.Unit 5 (254 KB)
Biol.Unit 6 (253 KB)
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(1)
Title
:
C3B IN COMPLEX WITH A C3B SPECIFIC FAB
Authors
:
C. Wiesmann
Date
:
06 Feb 09 (Deposition) - 10 Mar 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,E,F (1x)
Biol. Unit 2: C,D,G,H (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Biol. Unit 5: A,B (1x)
Biol. Unit 6: C,D (1x)
Keywords
:
Complement, C3B, Fab, Antibody:Antigen, Age-Related Macular Degeneration, Cleavage On Pair Of Basic Residues, Complement Alternate Pathway, Complement Pathway, Disease Mutation, Glycoprotein, Immune Response, Inflammatory Response, Innate Immunity, Phosphoprotein, Secreted, Thioester Bond, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. J. Katschke, S. Stawicki, J. Yin, M. Steffek, H. Xi, L. Sturgeon, P. E. Hass, K. M. Loyet, L. Deforge, Y. Wu, M. Van Lookeren Campagne, C. Wiesmann
Structural And Functional Analysis Of A C3B-Specific Antibody That Selectively Inhibits The Alternative Pathway Of Complement
J. Biol. Chem. V. 284 10473 2009
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Hetero Components
(0, 0)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
View:
Select:
Label:
Sorry, no Info available
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]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PRO A:505 , ASP A:532 , VAL A:533 , ASP A:535
BINDING SITE FOR RESIDUE CA A 645
[
close Site info
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SAPs(SNPs)/Variants
(22, 22)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_001983 (R80G, chain A, )
02: VAR_070941 (K133Q, chain A, )
03: VAR_001984 (P292L, chain A, )
04: VAR_020262 (E447D, chain A, )
05: VAR_001985 (D527N, chain A, )
06: VAR_063213 (R570Q, chain A, )
07: VAR_063214 (R570W, chain A, )
08: VAR_063654 (F581V, chain A, )
09: VAR_019206 (R841K, chain B, )
10: VAR_063655 (R1020L, chain B, )
11: VAR_063216 (A1072V, chain B, )
12: VAR_063217 (D1093N, chain B, )
13: VAR_063218 (C1136W, chain B, )
14: VAR_063219 (Q1139K, chain B, )
15: VAR_022761 (D1194N, chain B, )
16: VAR_019207 (G1202D, chain B, )
17: VAR_001986 (R1298Q, chain B, )
18: VAR_019208 (I1345T, chain B, )
19: VAR_063220 (H1442D, chain B, )
20: VAR_029792 (Q1499R, chain B, )
21: VAR_029793 (H1579N, chain B, )
22: VAR_029326 (S1597R, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_001983
R
102
G
CO3_HUMAN
Polymorphism
2230199
A
R
80
G
02
UniProt
VAR_070941
K
155
Q
CO3_HUMAN
Disease (ARMD9)
---
A
K
133
Q
03
UniProt
VAR_001984
P
314
L
CO3_HUMAN
Polymorphism
1047286
A
P
292
L
04
UniProt
VAR_020262
E
469
D
CO3_HUMAN
Polymorphism
11569422
A
E
447
D
05
UniProt
VAR_001985
D
549
N
CO3_HUMAN
Disease (C3D)
---
A
D
527
N
06
UniProt
VAR_063213
R
592
Q
CO3_HUMAN
Disease (AHUS5)
---
A
R
570
Q
07
UniProt
VAR_063214
R
592
W
CO3_HUMAN
Disease (AHUS5)
---
A
R
570
W
08
UniProt
VAR_063654
F
603
V
CO3_HUMAN
Disease (AHUS5)
---
A
F
581
V
09
UniProt
VAR_019206
R
863
K
CO3_HUMAN
Polymorphism
11569472
B
R
841
K
10
UniProt
VAR_063655
R
1042
L
CO3_HUMAN
Disease (AHUS5)
---
B
R
1020
L
11
UniProt
VAR_063216
A
1094
V
CO3_HUMAN
Disease (AHUS5)
---
B
A
1072
V
12
UniProt
VAR_063217
D
1115
N
CO3_HUMAN
Disease (AHUS5)
---
B
D
1093
N
13
UniProt
VAR_063218
C
1158
W
CO3_HUMAN
Disease (AHUS5)
---
B
C
1136
W
14
UniProt
VAR_063219
Q
1161
K
CO3_HUMAN
Disease (AHUS5)
---
B
Q
1139
K
15
UniProt
VAR_022761
D
1216
N
CO3_HUMAN
Unclassified
---
B
D
1194
N
16
UniProt
VAR_019207
G
1224
D
CO3_HUMAN
Polymorphism
11569534
B
G
1202
D
17
UniProt
VAR_001986
R
1320
Q
CO3_HUMAN
Disease (C3D)
---
B
R
1298
Q
18
UniProt
VAR_019208
I
1367
T
CO3_HUMAN
Polymorphism
11569541
B
I
1345
T
19
UniProt
VAR_063220
H
1464
D
CO3_HUMAN
Disease (AHUS5)
---
B
H
1442
D
20
UniProt
VAR_029792
Q
1521
R
CO3_HUMAN
Polymorphism
7256789
B
Q
1499
R
21
UniProt
VAR_029793
H
1601
N
CO3_HUMAN
Polymorphism
1803225
B
H
1579
N
22
UniProt
VAR_029326
S
1619
R
CO3_HUMAN
Polymorphism
2230210
B
S
1597
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: ALPHA_2_MACROGLOBULIN (B:985-993)
2: NTR (B:1496-1639)
;
View:
Select:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALPHA_2_MACROGLOBULIN
PS00477
Alpha-2-macroglobulin family thiolester region signature.
CO3_HUMAN
1007-1015
1
B:985-993
-
2
NTR
PS50189
NTR domain profile.
CO3_HUMAN
1518-1661
1
B:1496-1639
-
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Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d3g6je1 (E:1-106)
1b: SCOP_d3g6jg1 (G:1-106)
2a: SCOP_d3g6je2 (E:107-214)
2b: SCOP_d3g6jg2 (G:107-214)
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Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
automated matches
(864)
Protein domain
:
automated matches
(864)
Human (Homo sapiens) [TaxId: 9606]
(448)
1a
d3g6je1
E:1-106
1b
d3g6jg1
G:1-106
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
automated matches
(652)
Human (Homo sapiens) [TaxId: 9606]
(334)
2a
d3g6je2
E:107-214
2b
d3g6jg2
G:107-214
[
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_3g6jE02 (E:109-214)
1b: CATH_3g6jF02 (F:114-213)
1c: CATH_3g6jH02 (H:114-213)
1d: CATH_3g6jF01 (F:1-113)
1e: CATH_3g6jH01 (H:1-113)
1f: CATH_3g6jG02 (G:109-214)
View:
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Classes
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)
(
)
Architectures
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
1a
3g6jE02
E:109-214
1b
3g6jF02
F:114-213
1c
3g6jH02
H:114-213
1d
3g6jF01
F:1-113
1e
3g6jH01
H:1-113
1f
3g6jG02
G:109-214
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Pfam Domains
(0, 0)
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