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3G5H
Biol. Unit 2
Info
Asym.Unit (158 KB)
Biol.Unit 1 (153 KB)
Biol.Unit 2 (302 KB)
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(1)
Title
:
CRYSTALLOGRAPHIC ANALYSIS OF CYTOCHROME P450 CYP121
Authors
:
P. Belin, M. H. Le Du, M. Gondry
Date
:
05 Feb 09 (Deposition) - 21 Apr 09 (Release) - 09 Dec 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.40
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Biol. Unit 2: A (2x)
Keywords
:
Cytochrome P450, Cyp121, Tuberculosis, Cyclodipeptide, Substrate, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Belin, M. H. Le Du, A. Fielding, O. Lequin, M. Jacquet, J. B. Charbonnier, A. Lecoq, R. Thai, M. Courcon, C. Masson, C. Dugave, R. Genet, J. L. Pernodet, M. Gondry
Identification And Structural Basis Of The Reaction Catalyzed By Cyp121, An Essential Cytochrome P450 In Mycobacterium Tuberculosis.
Proc. Natl. Acad. Sci. Usa V. 106 7426 2009
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2a: SULFATE ION (SO4a)
3a: (3S,6S)-3,6-BIS(4-HYDROXYBENZYL)PI... (YTTa)
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No.
Name
Count
Type
Full Name
1
HEM
2
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
2
SO4
2
Ligand/Ion
SULFATE ION
3
YTT
2
Ligand/Ion
(3S,6S)-3,6-BIS(4-HYDROXYBENZYL)PIPERAZINE-2,5-DIONE
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
MET A:62 , MET A:86 , HIS A:146 , PHE A:230 , GLY A:234 , SER A:237 , PHE A:241 , PHE A:280 , LEU A:284 , ARG A:286 , ALA A:337 , PHE A:338 , GLY A:339 , HIS A:343 , CYS A:345 , PRO A:346 , YTT A:397 , HOH A:684 , HOH A:707 , HOH A:743 , HOH A:751 , HOH A:800 , HOH A:914
BINDING SITE FOR RESIDUE HEM A 462
2
AC2
SOFTWARE
MET A:62 , VAL A:78 , VAL A:82 , VAL A:83 , ASN A:85 , ALA A:167 , PHE A:168 , THR A:229 , ARG A:386 , HEM A:462 , HOH A:685 , HOH A:723 , HOH A:729 , HOH A:751 , HOH A:810 , HOH A:944
BINDING SITE FOR RESIDUE YTT A 397
3
AC3
SOFTWARE
ARG A:58 , SER A:61 , MET A:62 , LYS A:63 , HIS A:343 , HOH A:670 , HOH A:979 , HOH A:988 , HOH A:1014 , HOH A:1036
BINDING SITE FOR RESIDUE SO4 A 398
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: CYTOCHROME_P450 (A:338-347)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYTOCHROME_P450
PS00086
Cytochrome P450 cysteine heme-iron ligand signature.
CP121_MYCTO
338-347
2
A:338-347
CP121_MYCTU
338-347
2
A:338-347
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3g5ha_ (A:)
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)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Cytochrome P450
(480)
Superfamily
:
Cytochrome P450
(480)
Family
:
Cytochrome P450
(323)
Protein domain
:
Cyp121 monooxygenase (P450 Mt2)
(28)
Mycobacterium tuberculosis [TaxId: 1773]
(28)
1a
d3g5ha_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_3g5hA00 (A:3-396)
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Organisms
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Cytochrome p450
(271)
Homologous Superfamily
:
Cytochrome p450
(271)
Mycobacterium tuberculosis. Organism_taxid: 1773.
(3)
1a
3g5hA00
A:3-396
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Pfam Domains
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Asym.Unit (158 KB)
Header - Asym.Unit
Biol.Unit 1 (153 KB)
Header - Biol.Unit 1
Biol.Unit 2 (302 KB)
Header - Biol.Unit 2
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