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3G3K
Biol. Unit 1
Info
Asym.Unit (213 KB)
Biol.Unit 1 (206 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE GLUR6 LIGAND BINDING DOMAIN DIMER I442H K494E K665R I749L Q753K E757Q MUTANT WITH GLUTAMATE AND NACL AT 1.24 ANGSTROM RESOLUTION
Authors
:
C. Chaudhry, M. L. Mayer
Date
:
02 Feb 09 (Deposition) - 02 Jun 09 (Release) - 02 Jun 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.24
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Membrane Protein, Cell Junction, Cell Membrane, Glycoprotein, Ion Transport, Ionic Channel, Membrane, Postsynaptic Cell Membrane, Receptor, Rna Editing, Synapse, Transmembrane, Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
C. Chaudhry, M. C. Weston, P. Schuck, C. Rosenmund, M. L. Mayer
Stability Of Ligand-Binding Domain Dimer Assembly Controls Kainate Receptor Desensitization.
Embo J. V. 28 1518 2009
(for further references see the
PDB file header
)
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
2a: GLUTAMIC ACID (GLUa)
2b: GLUTAMIC ACID (GLUb)
3a: ISOPROPYL ALCOHOL (IPAa)
3b: ISOPROPYL ALCOHOL (IPAb)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
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Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
GLU
2
Mod. Amino Acid
GLUTAMIC ACID
3
IPA
2
Ligand/Ion
ISOPROPYL ALCOHOL
4
NA
-1
Ligand/Ion
SODIUM ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:61 , PRO A:89 , LEU A:90 , ALA A:91 , ARG A:96 , GLY A:141 , ALA A:142 , THR A:143 , GLU A:191 , HOH A:273 , HOH A:275 , HOH A:287 , HOH A:312
BINDING SITE FOR RESIDUE GLU A 260
02
AC2
SOFTWARE
LYS A:104 , ARG A:228 , LYS B:104 , ARG B:228
BINDING SITE FOR RESIDUE CL A 261
03
AC3
SOFTWARE
GLY A:242 , LEU A:244 , HIS A:245 , HOH B:549
BINDING SITE FOR RESIDUE CL A 262
04
AC4
SOFTWARE
TYR A:94 , ARG A:149 , IPA A:266 , HOH A:290 , LYS B:237
BINDING SITE FOR RESIDUE CL A 263
05
AC5
SOFTWARE
GLU A:97 , ILE A:100 , ASP A:101 , MET A:223 , HOH A:421
BINDING SITE FOR RESIDUE NA A 264
06
AC6
SOFTWARE
PRO A:105 , THR A:108 , SER A:214 , LYS A:215 , HOH A:450 , THR B:108 , GLN B:239
BINDING SITE FOR RESIDUE IPA A 265
07
AC7
SOFTWARE
TYR A:94 , VAL A:95 , GLU A:98 , CL A:263 , HOH A:290 , HOH A:321 , HOH A:583
BINDING SITE FOR RESIDUE IPA A 266
08
AC8
SOFTWARE
TYR B:61 , PRO B:89 , LEU B:90 , ALA B:91 , ARG B:96 , GLY B:141 , ALA B:142 , THR B:143 , GLU B:191 , HOH B:277 , HOH B:279 , HOH B:290 , HOH B:339
BINDING SITE FOR RESIDUE GLU B 260
09
AC9
SOFTWARE
SER B:5 , GLY B:118
BINDING SITE FOR RESIDUE CL B 261
10
BC1
SOFTWARE
HOH A:334 , GLY B:242 , LEU B:244 , HIS B:245
BINDING SITE FOR RESIDUE CL B 262
11
BC2
SOFTWARE
GLU B:97 , ILE B:100 , ASP B:101 , MET B:223 , HOH B:517
BINDING SITE FOR RESIDUE NA B 263
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3g3ka_ (A:)
1b: SCOP_d3g3kb_ (B:)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like II
(813)
Superfamily
:
Periplasmic binding protein-like II
(813)
Family
:
automated matches
(267)
Protein domain
:
automated matches
(267)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(73)
1a
d3g3ka_
A:
1b
d3g3kb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3g3kA01 (A:3-109,A:215-258)
1b: CATH_3g3kB01 (B:2-109,B:215-257)
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
D-Maltodextrin-Binding Protein; domain 2
(600)
Homologous Superfamily
:
Periplasmic binding protein-like II
(486)
Rattus norvegicus. Organism_taxid: 10116.
(10)
1a
3g3kA01
A:3-109,A:215-258
1b
3g3kB01
B:2-109,B:215-257
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (213 KB)
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