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3G2U
Asym. Unit
Info
Asym.Unit (108 KB)
Biol.Unit 1 (52 KB)
Biol.Unit 2 (52 KB)
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(1)
Title
:
VHS DOMAIN OF HUMAN GGA1 COMPLEXED WITH SOTILIN C-TERMINAL PEPTIDE
Authors
:
J. F. Cramer, M. A. Behrens, C. Gustafsen, C. L. P. Oliveira, J. S. Peders P. Madsen, C. M. Petersen, S. S. Thirup
Date
:
01 Feb 09 (Deposition) - 15 Dec 09 (Release) - 05 Feb 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Adp-Ribosylation Factor Binding Protein Gga1, Vhs, Acidic-Cluster Dileucine Signal, Sortilin, Protein Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. F. Cramer, C. Gustafsen, M. A. Behrens, C. L. P. Oliveira, J. S. Pedersen, P. Madsen, C. M. Petersen, S. S. Thirup
Gga Autoinhibition Revisited
Traffic V. 11 259 2010
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Hetero Components
(1, 5)
Info
All Hetero Components
1a: IODIDE ION (IODa)
1b: IODIDE ION (IODb)
1c: IODIDE ION (IODc)
1d: IODIDE ION (IODd)
1e: IODIDE ION (IODe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
IOD
5
Ligand/Ion
IODIDE ION
[
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:50 , GLN B:59
BINDING SITE FOR RESIDUE IOD A 148
2
AC2
SOFTWARE
PRO A:58 , GLN A:59 , LEU B:50
BINDING SITE FOR RESIDUE IOD A 149
3
AC3
SOFTWARE
ASN A:38 , GLY A:78
BINDING SITE FOR RESIDUE IOD A 150
4
AC4
SOFTWARE
TRP A:27 , GLN A:137 , LYS A:140
BINDING SITE FOR RESIDUE IOD A 151
5
AC5
SOFTWARE
GLU B:60 , LYS B:110
BINDING SITE FOR RESIDUE IOD B 148
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: VHS (A:17-146,B:17-146)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
VHS
PS50179
VHS domain profile.
GGA1_HUMAN
17-147
2
A:17-146
B:17-146
[
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Exons
(6, 12)
Info
All Exons
Exon 1.1a (A:7-15 | B:7-15)
Exon 1.7c (A:15-43 | B:15-43)
Exon 1.8a (A:43-68 | B:43-68)
Exon 1.9c (A:69-101 | B:69-101)
Exon 1.10f (A:102-143 | B:102-143)
Exon 1.11b (A:143-146 | B:143-146)
View:
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.7c
3: Boundary 1.7c/1.8a
4: Boundary 1.8a/1.9c
5: Boundary 1.9c/1.10f
6: Boundary 1.10f/1.11b
7: Boundary 1.11b/1.12c
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000343632
1a
ENSE00001813421
chr22:
38004482-38004910
429
GGA1_HUMAN
1-15
15
2
A:7-15
B:7-15
9
9
1.7c
ENST00000343632
7c
ENSE00002140158
chr22:
38010197-38010281
85
GGA1_HUMAN
15-43
29
2
A:15-43
B:15-43
29
29
1.8a
ENST00000343632
8a
ENSE00001612880
chr22:
38012929-38013004
76
GGA1_HUMAN
43-68
26
2
A:43-68
B:43-68
26
26
1.9c
ENST00000343632
9c
ENSE00001683976
chr22:
38014455-38014553
99
GGA1_HUMAN
69-101
33
2
A:69-101
B:69-101
33
33
1.10f
ENST00000343632
10f
ENSE00000880168
chr22:
38016245-38016368
124
GGA1_HUMAN
102-143
42
2
A:102-143
B:102-143
42
42
1.11b
ENST00000343632
11b
ENSE00000880169
chr22:
38016820-38016920
101
GGA1_HUMAN
143-176
34
2
A:143-146
B:143-146
4
4
1.12c
ENST00000343632
12c
ENSE00000653934
chr22:
38017623-38017703
81
GGA1_HUMAN
177-203
27
0
-
-
1.13
ENST00000343632
13
ENSE00000880172
chr22:
38019334-38019474
141
GGA1_HUMAN
204-250
47
0
-
-
1.14b
ENST00000343632
14b
ENSE00000880174
chr22:
38019559-38019640
82
GGA1_HUMAN
251-278
28
0
-
-
1.14e
ENST00000343632
14e
ENSE00001286815
chr22:
38020976-38021083
108
GGA1_HUMAN
278-314
37
0
-
-
1.15a
ENST00000343632
15a
ENSE00000653938
chr22:
38021804-38021956
153
GGA1_HUMAN
314-365
52
0
-
-
1.16
ENST00000343632
16
ENSE00000653944
chr22:
38025469-38025533
65
GGA1_HUMAN
365-386
22
0
-
-
1.17a
ENST00000343632
17a
ENSE00000653945
chr22:
38026005-38026177
173
GGA1_HUMAN
387-444
58
0
-
-
1.18b
ENST00000343632
18b
ENSE00000653946
chr22:
38026910-38027106
197
GGA1_HUMAN
444-510
67
0
-
-
1.19
ENST00000343632
19
ENSE00000653947
chr22:
38028003-38028172
170
GGA1_HUMAN
510-566
57
0
-
-
1.20
ENST00000343632
20
ENSE00000653948
chr22:
38028412-38028522
111
GGA1_HUMAN
567-603
37
0
-
-
1.21d
ENST00000343632
21d
ENSE00001823052
chr22:
38028608-38029571
964
GGA1_HUMAN
604-639
36
0
-
-
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3g2ua_ (A:)
1b: SCOP_d3g2ub_ (B:)
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
ENTH/VHS domain
(36)
Family
:
VHS domain
(16)
Protein domain
:
automated matches
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d3g2ua_
A:
1b
d3g2ub_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3g2uA00 (A:7-146)
1b: CATH_3g2uB00 (B:7-146)
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Homologous Superfamilies
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Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
(320)
Homologous Superfamily
:
[code=1.25.40.90, no name defined]
(33)
Human (Homo sapiens)
(20)
1a
3g2uA00
A:7-146
1b
3g2uB00
B:7-146
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
(currently selected atoms:
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Nucleic
Backbone
Sidechain
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Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (108 KB)
Header - Asym.Unit
Biol.Unit 1 (52 KB)
Header - Biol.Unit 1
Biol.Unit 2 (52 KB)
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