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3G15
Asym. Unit
Info
Asym.Unit (127 KB)
Biol.Unit 1 (119 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN CHOLINE KINASE ALPHA IN COMPLEX WITH HEMICHOLINIUM-3 AND ADP
Authors
:
B. S. Hong, W. Tempel, W. M. Rabeh, F. Mackenzie, C. H. Arrowsmith, A. M. E C. Bountra, J. Weigelt, A. Bochkarev, H. W. Park, Structural Genomic Consortium (Sgc)
Date
:
29 Jan 09 (Deposition) - 10 Feb 09 (Release) - 01 Sep 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Non-Protein Kinase, Choline Kinase, Structural Genomics Consortium, Sgc, Hemicholinium-3, Kinase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. S. Hong, A. Allali-Hassani, W. Tempel, P. J. Finerty, F. Mackenzie, S. Dimov, M. Vedadi, H. W. Park
Crystal Structures Of Human Choline Kinase Isoforms In Complex With Hemicholinium-3: Single Amino Acid Near The Active Site Influences Inhibitor Sensitivity.
J. Biol. Chem. V. 285 16330 2010
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Hetero Components
(5, 31)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
1b: ADENOSINE-5'-DIPHOSPHATE (ADPb)
2a: (2S,2'S)-2,2'-BIPHENYL-4,4'-DIYLBI... (HC6a)
2b: (2S,2'S)-2,2'-BIPHENYL-4,4'-DIYLBI... (HC6b)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
5a: UNKNOWN ATOM OR ION (UNXa)
5b: UNKNOWN ATOM OR ION (UNXb)
5c: UNKNOWN ATOM OR ION (UNXc)
5d: UNKNOWN ATOM OR ION (UNXd)
5e: UNKNOWN ATOM OR ION (UNXe)
5f: UNKNOWN ATOM OR ION (UNXf)
5g: UNKNOWN ATOM OR ION (UNXg)
5h: UNKNOWN ATOM OR ION (UNXh)
5i: UNKNOWN ATOM OR ION (UNXi)
5j: UNKNOWN ATOM OR ION (UNXj)
5k: UNKNOWN ATOM OR ION (UNXk)
5l: UNKNOWN ATOM OR ION (UNXl)
5m: UNKNOWN ATOM OR ION (UNXm)
5n: UNKNOWN ATOM OR ION (UNXn)
5o: UNKNOWN ATOM OR ION (UNXo)
5p: UNKNOWN ATOM OR ION (UNXp)
5q: UNKNOWN ATOM OR ION (UNXq)
5r: UNKNOWN ATOM OR ION (UNXr)
5s: UNKNOWN ATOM OR ION (UNXs)
5t: UNKNOWN ATOM OR ION (UNXt)
5u: UNKNOWN ATOM OR ION (UNXu)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
2
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
HC6
2
Ligand/Ion
(2S,2'S)-2,2'-BIPHENYL-4,4'-DIYLBIS(2-HYDROXY-4,4-DIMETHYLMORPHOLIN-4-IUM)
3
MG
4
Ligand/Ion
MAGNESIUM ION
4
SO4
2
Ligand/Ion
SULFATE ION
5
UNX
21
Ligand/Ion
UNKNOWN ATOM OR ION
[
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Sites
(31, 31)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HOH A:49 , ARG A:117 , LEU A:124 , LEU A:144 , ARG A:146 , PRO A:194 , GLN A:207 , ILE A:209 , ARG A:213 , GLY A:310 , ASN A:311 , ILE A:329 , ASP A:330 , GLU A:332 , HOH A:490 , MG A:602 , SO4 A:604 , MG A:605
BINDING SITE FOR RESIDUE ADP A 601
02
AC2
SOFTWARE
HOH A:49 , ASN A:311 , ASP A:330 , ADP A:601 , SO4 A:604 , MG A:605
BINDING SITE FOR RESIDUE MG A 602
03
AC3
SOFTWARE
UNX A:2 , ASP A:306 , GLN A:308 , TYR A:333 , TYR A:354 , PHE A:361 , TRP A:420 , TRP A:423 , ILE A:433 , GLU A:434 , PHE A:435 , TYR A:440 , SO4 A:604
BINDING SITE FOR RESIDUE HC6 A 603
04
AC4
SOFTWARE
HOH A:39 , HOH A:49 , HOH A:50 , ASP A:306 , GLN A:308 , ASN A:311 , ASP A:330 , GLU A:332 , ADP A:601 , MG A:602 , HC6 A:603 , MG A:605
BINDING SITE FOR RESIDUE SO4 A 604
05
AC5
SOFTWARE
HOH A:39 , ASP A:330 , GLU A:332 , ADP A:601 , MG A:602 , SO4 A:604
BINDING SITE FOR RESIDUE MG A 605
06
AC6
SOFTWARE
GLU A:309 , GLU A:349 , TYR A:352
BINDING SITE FOR RESIDUE UNX A 606
07
AC7
SOFTWARE
PRO A:85 , ARG A:86 , ASN B:365
BINDING SITE FOR RESIDUE UNX A 1
08
AC8
SOFTWARE
TYR A:354 , TYR A:356 , PHE A:361 , HC6 A:603
BINDING SITE FOR RESIDUE UNX A 2
09
AC9
SOFTWARE
UNX A:4 , TYR A:437 , MET A:438
BINDING SITE FOR RESIDUE UNX A 3
10
BC1
SOFTWARE
UNX A:3 , LYS A:273 , TYR A:359 , GLY A:436 , TYR A:437 , MET A:438 , ASP A:439
BINDING SITE FOR RESIDUE UNX A 4
11
BC2
SOFTWARE
TYR A:148 , MET A:177 , ILE A:199 , PHE A:200 , GLY A:203
BINDING SITE FOR RESIDUE UNX A 12
12
BC3
SOFTWARE
HIS A:304 , ASP A:306 , ASP A:330 , PHE A:331 , GLU A:332 , TYR A:333 , SER A:334
BINDING SITE FOR RESIDUE UNX A 13
13
BC4
SOFTWARE
PRO A:83 , GLU A:84 , THR A:87
BINDING SITE FOR RESIDUE UNX A 14
14
BC5
SOFTWARE
PHE A:184 , ALA A:188 , GLY A:193 , PRO A:194
BINDING SITE FOR RESIDUE UNX A 16
15
BC6
SOFTWARE
ASP A:215 , THR A:216 , GLU A:217 , HOH A:532
BINDING SITE FOR RESIDUE UNX A 17
16
BC7
SOFTWARE
LEU A:455 , HOH A:471
BINDING SITE FOR RESIDUE UNX A 19
17
BC8
SOFTWARE
ARG A:104
BINDING SITE FOR RESIDUE UNX A 20
18
BC9
SOFTWARE
HOH B:2 , LEU B:124 , LEU B:144 , ARG B:146 , PRO B:194 , GLN B:207 , PHE B:208 , ILE B:209 , GLY B:310 , ASN B:311 , ILE B:329 , ASP B:330 , GLU B:332 , HOH B:488 , HOH B:501 , HOH B:557 , MG B:602 , SO4 B:604 , MG B:605
BINDING SITE FOR RESIDUE ADP B 601
19
CC1
SOFTWARE
HOH B:2 , ASN B:311 , ASP B:330 , ADP B:601 , SO4 B:604
BINDING SITE FOR RESIDUE MG B 602
20
CC2
SOFTWARE
ASP B:306 , TYR B:333 , TYR B:354 , PHE B:361 , TRP B:420 , TRP B:423 , ILE B:433 , GLU B:434 , PHE B:435 , TYR B:440 , SO4 B:604
BINDING SITE FOR RESIDUE HC6 B 603
21
CC3
SOFTWARE
HOH B:2 , ASP B:306 , GLN B:308 , ASN B:311 , ASP B:330 , GLU B:332 , HOH B:549 , ADP B:601 , MG B:602 , HC6 B:603 , MG B:605
BINDING SITE FOR RESIDUE SO4 B 604
22
CC4
SOFTWARE
HOH B:1 , ASP B:330 , GLU B:332 , ADP B:601 , SO4 B:604
BINDING SITE FOR RESIDUE MG B 605
23
CC5
SOFTWARE
GLU B:309 , GLU B:349 , TYR B:352
BINDING SITE FOR RESIDUE UNX B 606
24
CC6
SOFTWARE
ARG B:212 , ARG B:213
BINDING SITE FOR RESIDUE UNX B 5
25
CC7
SOFTWARE
PRO B:222 , ASP B:223
BINDING SITE FOR RESIDUE UNX B 6
26
CC8
SOFTWARE
PHE B:265 , THR B:266 , GLU B:267 , ARG B:270
BINDING SITE FOR RESIDUE UNX B 7
27
CC9
SOFTWARE
PHE B:265 , ILE B:271
BINDING SITE FOR RESIDUE UNX B 8
28
DC1
SOFTWARE
ARG B:270 , TYR B:437 , MET B:438
BINDING SITE FOR RESIDUE UNX B 9
29
DC2
SOFTWARE
ARG A:86 , THR A:87 , ASN B:365
BINDING SITE FOR RESIDUE UNX B 10
30
DC3
SOFTWARE
PRO B:246 , PHE B:250
BINDING SITE FOR RESIDUE UNX B 15
31
DC4
SOFTWARE
TYR B:356 , GLU B:357
BINDING SITE FOR RESIDUE UNX B 18
[
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]
SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_054863 (S220G, chain A/B, )
2: VAR_054864 (L422Q, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_054863
S
220
G
CHKA_HUMAN
Polymorphism
17853641
A/B
S
220
G
2
UniProt
VAR_054864
L
422
Q
CHKA_HUMAN
Polymorphism
17853642
A/B
L
422
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(11, 22)
Info
All Exons
Exon 1.1b (A:81-117 | B:88-103 (gaps))
Exon 1.2 (A:117-150 | B:123-147 (gaps))
Exon 1.6 (A:174-210 | B:177-210)
Exon 1.7b (A:211-255 | B:211-255)
Exon 1.8b (A:255-290 | B:255-290)
Exon 1.9 (A:290-310 | B:290-310)
Exon 1.10c (A:310-339 | B:310-339)
Exon 1.11 (A:339-375 | B:339-375)
Exon 1.12 (A:376-411 | B:376-411)
Exon 1.13 (A:411-438 | B:411-438)
Exon 1.15d (A:439-457 | B:439-457)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1b
02: Boundary 1.1b/1.2
03: Boundary 1.2/1.5c
04: Boundary 1.5c/1.6
05: Boundary 1.6/1.7b
06: Boundary 1.7b/1.8b
07: Boundary 1.8b/1.9
08: Boundary 1.9/1.10c
09: Boundary 1.10c/1.11
10: Boundary 1.11/1.12
11: Boundary 1.12/1.13
12: Boundary 1.13/1.15d
13: Boundary 1.15d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000265689
1b
ENSE00002184538
chr11:
67888671-67888295
377
CHKA_HUMAN
1-117
117
2
A:81-117
B:88-103 (gaps)
37
16
1.2
ENST00000265689
2
ENSE00001201105
chr11:
67864597-67864486
112
CHKA_HUMAN
117-154
38
2
A:117-150
B:123-147 (gaps)
34
25
1.5c
ENST00000265689
5c
ENSE00001166770
chr11:
67848924-67848871
54
CHKA_HUMAN
155-172
18
0
-
-
1.6
ENST00000265689
6
ENSE00001267789
chr11:
67842297-67842184
114
CHKA_HUMAN
173-210
38
2
A:174-210
B:177-210
37
34
1.7b
ENST00000265689
7b
ENSE00000736988
chr11:
67838324-67838191
134
CHKA_HUMAN
211-255
45
2
A:211-255
B:211-255
45
45
1.8b
ENST00000265689
8b
ENSE00000736987
chr11:
67837760-67837656
105
CHKA_HUMAN
255-290
36
2
A:255-290
B:255-290
36
36
1.9
ENST00000265689
9
ENSE00000736986
chr11:
67836404-67836346
59
CHKA_HUMAN
290-310
21
2
A:290-310
B:290-310
21
21
1.10c
ENST00000265689
10c
ENSE00000736983
chr11:
67833983-67833896
88
CHKA_HUMAN
310-339
30
2
A:310-339
B:310-339
30
30
1.11
ENST00000265689
11
ENSE00000736982
chr11:
67833361-67833253
109
CHKA_HUMAN
339-375
37
2
A:339-375
B:339-375
37
37
1.12
ENST00000265689
12
ENSE00000736981
chr11:
67832098-67831992
107
CHKA_HUMAN
376-411
36
2
A:376-411
B:376-411
36
36
1.13
ENST00000265689
13
ENSE00001117236
chr11:
67829501-67829420
82
CHKA_HUMAN
411-438
28
2
A:411-438
B:411-438
28
28
1.15d
ENST00000265689
15d
ENSE00001166765
chr11:
67821514-67820326
1189
CHKA_HUMAN
439-457
19
2
A:439-457
B:439-457
19
19
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Sorry, no Info available
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3g15B02 (B:177-194,B:209-457)
1b: CATH_3g15A02 (A:174-194,A:209-457)
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Homologous Superfamilies
(
)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2
(23)
Homologous Superfamily
:
[code=3.90.1200.10, no name defined]
(23)
Human (Homo sapiens)
(8)
1a
3g15B02
B:177-194,B:209-457
1b
3g15A02
A:174-194,A:209-457
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Asym.Unit (127 KB)
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