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3G04
Asym. Unit
Info
Asym.Unit (120 KB)
Biol.Unit 1 (113 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE TSH RECEPTOR IN COMPLEX WITH A THYROID-STIMULATING AUTOANTIBODY
Authors
:
J. Sanders, D. Y. Chirgadze, P. Sanders, S. Baker, A. Sullivan, A. Bhard J. Bolton, M. Reeve, N. Nakatake, M. Evans, T. Richards, M. Powell, R. N T. L. Blundell, J. Furmaniak, B. R. Smith
Date
:
27 Jan 09 (Deposition) - 04 Aug 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.55
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Tsh Receptor, Gpcr, Thyroid, Graves' Disease, Autoimmunity, Receptor- Autoantibody Complex, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Sanders, D. Y. Chirgadze, P. Sanders, S. Baker, A. Sullivan, A. Bhardwaja, J. Bolton, M. Reeve, N. Nakatake, M. Evans, T. Richards, M. Powell, R. N. Miguel, T. L. Blundell, J. Furmaniak, B. R. Smith
Crystal Structure Of The Tsh Receptor In Complex With A Thyroid-Stimulating Autoantibody
Thyroid V. 17 395 2007
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 11)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
1c: N-ACETYL-D-GLUCOSAMINE (NAGc)
1d: N-ACETYL-D-GLUCOSAMINE (NAGd)
1e: N-ACETYL-D-GLUCOSAMINE (NAGe)
1f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
2e: ZINC ION (ZNe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
2
ZN
5
Ligand/Ion
ZINC ION
[
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]
Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:2 , ASN A:26 , SER A:27 , SER A:27A , SER A:94 , LEU A:95
BINDING SITE FOR RESIDUE NAG A 213
02
AC2
SOFTWARE
HIS A:188
BINDING SITE FOR RESIDUE ZN A 304
03
AC3
SOFTWARE
ASP A:95A
BINDING SITE FOR RESIDUE ZN A 305
04
AC4
SOFTWARE
HOH A:318 , ASN C:170 , GLN C:173 , ASN C:198
BINDING SITE FOR RESIDUE NAG C 1
05
AC5
SOFTWARE
ASN C:177 , GLU C:178
BINDING SITE FOR RESIDUE NAG C 2
06
AC6
SOFTWARE
ASN C:99
BINDING SITE FOR RESIDUE NAG C 3
07
AC7
SOFTWARE
VAL C:87 , ASN C:113
BINDING SITE FOR RESIDUE NAG C 5
08
AC8
SOFTWARE
PRO C:52 , SER C:53 , ASN C:77
BINDING SITE FOR RESIDUE NAG C 6
09
AC9
SOFTWARE
HOH B:257 , HIS C:63
BINDING SITE FOR RESIDUE ZN C 301
10
BC1
SOFTWARE
HIS C:70 , GLU C:93 , HIS C:95 , HOH C:274
BINDING SITE FOR RESIDUE ZN C 302
11
BC2
SOFTWARE
ASP C:118 , ASP C:120
BINDING SITE FOR RESIDUE ZN C 303
[
close Site info
]
SAPs(SNPs)/Variants
(11, 11)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_055925 (E34K, chain C, )
02: VAR_003564 (D36H, chain C, )
03: VAR_011519 (C41S, chain C, )
04: VAR_003565 (P52T, chain C, )
05: VAR_011520 (R109Q, chain C, )
06: VAR_011521 (P162A, chain C, )
07: VAR_011522 (I167N, chain C, )
08: VAR_003566 (K183R, chain C, )
09: VAR_003567 (F197I, chain C, )
10: VAR_003568 (D219E, chain C, )
11: VAR_021495 (L252P, chain C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_055925
E
34
K
TSHR_HUMAN
Polymorphism
45499704
C
E
34
K
02
UniProt
VAR_003564
D
36
H
TSHR_HUMAN
Polymorphism
61747482
C
D
36
H
03
UniProt
VAR_011519
C
41
S
TSHR_HUMAN
Disease (CHNG1)
---
C
C
41
S
04
UniProt
VAR_003565
P
52
T
TSHR_HUMAN
Polymorphism
2234919
C
P
52
T
05
UniProt
VAR_011520
R
109
Q
TSHR_HUMAN
Disease (CHNG1)
---
C
R
109
Q
06
UniProt
VAR_011521
P
162
A
TSHR_HUMAN
Disease (CHNG1)
121908863
C
P
162
A
07
UniProt
VAR_011522
I
167
N
TSHR_HUMAN
Disease (CHNG1)
---
C
I
167
N
08
UniProt
VAR_003566
K
183
R
TSHR_HUMAN
Disease (HTFG)
---
C
K
183
R
09
UniProt
VAR_003567
F
197
I
TSHR_HUMAN
Unclassified
---
C
F
197
I
10
UniProt
VAR_003568
D
219
E
TSHR_HUMAN
Unclassified
---
C
D
219
E
11
UniProt
VAR_021495
L
252
P
TSHR_HUMAN
Disease (CHNG1)
---
C
L
252
P
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
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]
Exons
(9, 9)
Info
All Exons
Exon 1.1b (C:30-57)
Exon 1.2b (C:57-81)
Exon 1.3 (C:81-106)
Exon 1.4 (C:106-131)
Exon 1.5 (C:131-156)
Exon 1.6 (C:156-182)
Exon 1.7 (C:182-205)
Exon 1.8 (C:205-231)
Exon 1.10 (C:231-257)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1b
02: Boundary 1.1b/1.2b
03: Boundary 1.2b/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/1.8
09: Boundary 1.8/1.10
10: Boundary 1.10/1.11a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000298171
1b
ENSE00001274344
chr14:
81421869-81422194
326
TSHR_HUMAN
1-57
57
1
C:30-57
28
1.2b
ENST00000298171
2b
ENSE00001135626
chr14:
81528492-81528563
72
TSHR_HUMAN
57-81
25
1
C:57-81
25
1.3
ENST00000298171
3
ENSE00001092839
chr14:
81534598-81534672
75
TSHR_HUMAN
81-106
26
1
C:81-106
26
1.4
ENST00000298171
4
ENSE00001135605
chr14:
81554298-81554372
75
TSHR_HUMAN
106-131
26
1
C:106-131
26
1.5
ENST00000298171
5
ENSE00001315993
chr14:
81557413-81557487
75
TSHR_HUMAN
131-156
26
1
C:131-156
26
1.6
ENST00000298171
6
ENSE00001092852
chr14:
81558875-81558952
78
TSHR_HUMAN
156-182
27
1
C:156-182
27
1.7
ENST00000298171
7
ENSE00001311920
chr14:
81562983-81563051
69
TSHR_HUMAN
182-205
24
1
C:182-205
24
1.8
ENST00000298171
8
ENSE00001135568
chr14:
81574719-81574796
78
TSHR_HUMAN
205-231
27
1
C:205-231
27
1.10
ENST00000298171
10
ENSE00001318726
chr14:
81606023-81606211
189
TSHR_HUMAN
231-294
64
1
C:231-257
27
1.11a
ENST00000298171
11a
ENSE00001328054
chr14:
81609284-81612646
3363
TSHR_HUMAN
294-764
471
0
-
-
[
close EXON info
]
SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d3g04a1 (A:1-107)
1b: SCOP_d3g04a2 (A:108-208)
2a: SCOP_d3g04c_ (C:)
View:
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Classes
(
)
(
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Folds
(
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(
)
Superfamilies
(
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(
)
Families
(
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
automated matches
(864)
Protein domain
:
automated matches
(864)
Human (Homo sapiens) [TaxId: 9606]
(448)
1a
d3g04a1
A:1-107
1b
d3g04a2
A:108-208
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
(112)
Superfamily
:
L domain-like
(93)
Family
:
automated matches
(23)
Protein domain
:
automated matches
(23)
Human (Homo sapiens) [TaxId: 9606]
(11)
2a
d3g04c_
C:
[
close SCOP info
]
CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_3g04B02 (B:114-213)
1b: CATH_3g04B01 (B:1-113)
1c: CATH_3g04A02 (A:108-208)
View:
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Classes
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(
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Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Human (Homo sapiens)
(912)
1a
3g04B02
B:114-213
1b
3g04B01
B:1-113
1c
3g04A02
A:108-208
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
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Atom Selection
(currently selected atoms:
all
)
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Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
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