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3FYH
Asym. Unit
Info
Asym.Unit (57 KB)
Biol.Unit 1 (52 KB)
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(1)
Title
:
RECOMBINASE IN COMPLEX WITH ADP AND METATUNGSTATE
Authors
:
Y. Li, Y. He, Y. Luo
Date
:
22 Jan 09 (Deposition) - 01 Sep 09 (Release) - 01 Sep 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Atpase, Rada, Rad51, Reca, Recombinase, Inhibitor, Rada/Inhibitor Complex, Atp-Binding, Dna Damage, Dna Recombination, Dna-Binding, Nucleotide-Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Li, Y. He, Y. Luo
Crystal Structure Of An Archaeal Rad51 Homologue In Complex With A Metatungstate Inhibitor.
Biochemistry V. 48 6805 2009
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(4, 28)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
3a: SODIUM ION (NAa)
4a: TUNGSTEN ION (Wa)
4b: TUNGSTEN ION (Wb)
4c: TUNGSTEN ION (Wc)
4d: TUNGSTEN ION (Wd)
4e: TUNGSTEN ION (We)
4f: TUNGSTEN ION (Wf)
4g: TUNGSTEN ION (Wg)
4h: TUNGSTEN ION (Wh)
4i: TUNGSTEN ION (Wi)
4j: TUNGSTEN ION (Wj)
4k: TUNGSTEN ION (Wk)
4l: TUNGSTEN ION (Wl)
4m: TUNGSTEN ION (Wm)
4n: TUNGSTEN ION (Wn)
4o: TUNGSTEN ION (Wo)
4p: TUNGSTEN ION (Wp)
4q: TUNGSTEN ION (Wq)
4r: TUNGSTEN ION (Wr)
4s: TUNGSTEN ION (Ws)
4t: TUNGSTEN ION (Wt)
4u: TUNGSTEN ION (Wu)
4v: TUNGSTEN ION (Wv)
4w: TUNGSTEN ION (Ww)
4x: TUNGSTEN ION (Wx)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
1
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
MG
2
Ligand/Ion
MAGNESIUM ION
3
NA
1
Ligand/Ion
SODIUM ION
4
W
24
Ligand/Ion
TUNGSTEN ION
[
close Hetero Component info
]
Sites
(28, 28)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE A:107 , GLY A:108 , SER A:109 , GLY A:110 , LYS A:111 , THR A:112 , GLN A:113 , ARG A:158 , GLN A:161 , TYR A:301 , ASP A:302 , SER A:303 , PRO A:304 , HIS A:305 , LEU A:306 , PRO A:307 , ASP A:308 , THR A:316 , GLU A:317 , MG A:501 , HOH A:602 , HOH A:603 , HOH A:616 , HOH A:633 , HOH A:641 , HOH A:685
BINDING SITE FOR RESIDUE ADP A 401
02
AC2
SOFTWARE
THR A:112 , ADP A:401 , HOH A:601 , HOH A:602 , HOH A:603 , HOH A:608
BINDING SITE FOR RESIDUE MG A 501
03
AC3
SOFTWARE
GLN A:98 , ASP A:246 , HOH A:604 , HOH A:605 , HOH A:606 , HOH A:607
BINDING SITE FOR RESIDUE MG A 502
04
AC4
SOFTWARE
THR A:6 , LEU A:8 , VAL A:11 , GLU A:164
BINDING SITE FOR RESIDUE NA A 509
05
AC5
SOFTWARE
ARG A:230 , W A:516 , W A:517 , W A:519 , W A:521 , HOH A:617
BINDING SITE FOR RESIDUE W A 511
06
AC6
SOFTWARE
W A:516 , W A:518 , W A:522
BINDING SITE FOR RESIDUE W A 512
07
AC7
SOFTWARE
ALA A:228 , W A:515 , W A:520 , W A:521 , W A:522 , HOH A:721
BINDING SITE FOR RESIDUE W A 513
08
AC8
SOFTWARE
W A:515 , W A:518 , W A:519
BINDING SITE FOR RESIDUE W A 514
09
AC9
SOFTWARE
W A:513 , W A:514 , W A:518 , W A:522
BINDING SITE FOR RESIDUE W A 515
10
BC1
SOFTWARE
W A:511 , W A:512 , W A:521 , W A:522 , HOH A:721
BINDING SITE FOR RESIDUE W A 516
11
BC2
SOFTWARE
ARG A:230 , W A:511 , W A:518 , W A:519
BINDING SITE FOR RESIDUE W A 517
12
BC3
SOFTWARE
W A:512 , W A:514 , W A:515 , W A:517
BINDING SITE FOR RESIDUE W A 518
13
BC4
SOFTWARE
ARG A:230 , W A:511 , W A:514 , W A:517 , W A:520 , HOH A:617 , HOH A:700
BINDING SITE FOR RESIDUE W A 519
14
BC5
SOFTWARE
W A:513 , W A:519 , W A:521
BINDING SITE FOR RESIDUE W A 520
15
BC6
SOFTWARE
W A:511 , W A:513 , W A:516 , W A:520 , HOH A:721
BINDING SITE FOR RESIDUE W A 521
16
BC7
SOFTWARE
W A:512 , W A:513 , W A:515 , W A:516 , HOH A:721
BINDING SITE FOR RESIDUE W A 522
17
BC8
SOFTWARE
W A:528 , W A:529 , W A:531 , W A:533
BINDING SITE FOR RESIDUE W A 523
18
BC9
SOFTWARE
W A:528 , W A:529 , W A:534
BINDING SITE FOR RESIDUE W A 524
19
CC1
SOFTWARE
W A:527 , W A:532 , W A:533 , W A:534
BINDING SITE FOR RESIDUE W A 525
20
CC2
SOFTWARE
W A:527 , W A:530 , W A:531 , W A:532
BINDING SITE FOR RESIDUE W A 526
21
CC3
SOFTWARE
W A:525 , W A:526 , W A:530 , W A:534
BINDING SITE FOR RESIDUE W A 527
22
CC4
SOFTWARE
W A:523 , W A:524 , W A:534
BINDING SITE FOR RESIDUE W A 528
23
CC5
SOFTWARE
W A:523 , W A:524 , W A:530 , W A:531
BINDING SITE FOR RESIDUE W A 529
24
CC6
SOFTWARE
W A:526 , W A:527 , W A:529
BINDING SITE FOR RESIDUE W A 530
25
CC7
SOFTWARE
W A:523 , W A:526 , W A:529
BINDING SITE FOR RESIDUE W A 531
26
CC8
SOFTWARE
W A:525 , W A:526 , W A:533
BINDING SITE FOR RESIDUE W A 532
27
CC9
SOFTWARE
W A:523 , W A:525 , W A:532
BINDING SITE FOR RESIDUE W A 533
28
DC1
SOFTWARE
W A:524 , W A:525 , W A:527 , W A:528
BINDING SITE FOR RESIDUE W A 534
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: RECA_2 (A:76-258)
2: RECA_3 (A:279-322)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RECA_2
PS50162
RecA family profile 1.
RADA_METVO
76-258
1
A:76-258
2
RECA_3
PS50163
RecA family profile 2.
RADA_METVO
263-322
1
A:279-322
[
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]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d3fyha1 (A:5-64)
2a: SCOP_d3fyha2 (A:65-322)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
SAM domain-like
(639)
Superfamily
:
Rad51 N-terminal domain-like
(25)
Family
:
DNA repair protein Rad51, N-terminal domain
(16)
Protein domain
:
DNA repair protein Rad51, N-terminal domain
(16)
Methanococcus voltae [TaxId: 2188]
(8)
1a
d3fyha1
A:5-64
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
RecA protein-like (ATPase-domain)
(159)
Protein domain
:
DNA repair protein Rad51, catalytic domain
(18)
Methanococcus voltae [TaxId: 2188]
(10)
2a
d3fyha2
A:65-322
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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]
Atom Selection
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all
)
Protein
Nucleic
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Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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