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Asym. Unit
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Asym.Unit (55 KB)
Biol.Unit 1 (50 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PAK1 KINASE DOMAIN WITH RUTHENIUM COMPLEX DW1
Authors
:
J. Maksimoska, R. Marmorstein, E. Meggers
Date
:
21 Jan 09 (Deposition) - 03 Mar 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Transferase, Kinase, Atp-Binding, Phosphorylation, Allosteric Enzyme, Apoptosis, Cell Junction, Nucleotide-Binding, Phosphoprotein, Serine/Threonine-Protein Kinase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Maksimoska, L. Feng, K. Harms, C. Yi, J. Kissil, R. Marmorstein, E. Meggers
Targeting Large Kinase Active Site With Rigid, Bulky Octahedral Ruthenium Complexes
J. Am. Chem. Soc. V. 130 15764 2008
[
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: RUTHENIUM PYRIDOCARBAZOLE (DW1a)
2a: PHOSPHOTHREONINE (TPOa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DW1
1
Ligand/Ion
RUTHENIUM PYRIDOCARBAZOLE
2
TPO
1
Mod. Amino Acid
PHOSPHOTHREONINE
[
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ILE A:276 , GLY A:277 , VAL A:284 , ALA A:297 , MET A:344 , GLU A:345 , TYR A:346 , LEU A:347 , GLY A:350 , LEU A:396
BINDING SITE FOR RESIDUE DW1 A 200
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_051654 (L515V, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_051654
L
515
V
PAK1_HUMAN
Polymorphism
35345144
A
L
515
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:276-298)
2: PROTEIN_KINASE_ST (A:385-397)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
PAK1_HUMAN
276-299
1
A:276-298
2
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
PAK1_HUMAN
385-397
1
A:385-397
[
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Exons
(9, 9)
Info
All Exons
Exon 1.13d (A:249-258)
Exon 1.14a (A:258-279)
Exon 1.15c (A:279-295)
Exon 1.17b (A:296-333)
Exon 1.18 (A:333-372)
Exon 1.19 (A:373-406)
Exon 1.20c (A:406-471)
Exon 1.21b (A:472-517)
Exon 1.24e (A:518-541)
View:
Select:
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All Exon Boundaries
01: Boundary 1.12a/1.13d
02: Boundary 1.13d/1.14a
03: Boundary 1.14a/1.15c
04: Boundary 1.15c/1.17b
05: Boundary 1.17b/1.18
06: Boundary 1.18/1.19
07: Boundary 1.19/1.20c
08: Boundary 1.20c/1.21b
09: Boundary 1.21b/1.24e
10: Boundary 1.24e/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000356341
2a
ENSE00002168503
chr11:
77185107-77184597
511
PAK1_HUMAN
-
0
0
-
-
1.8b
ENST00000356341
8b
ENSE00002169181
chr11:
77103586-77103376
211
PAK1_HUMAN
1-64
64
0
-
-
1.9b
ENST00000356341
9b
ENSE00001153454
chr11:
77091039-77090939
101
PAK1_HUMAN
64-97
34
0
-
-
1.10d
ENST00000356341
10d
ENSE00001153445
chr11:
77090433-77090286
148
PAK1_HUMAN
98-147
50
0
-
-
1.11
ENST00000356341
11
ENSE00001153435
chr11:
77085410-77085373
38
PAK1_HUMAN
147-159
13
0
-
-
1.12a
ENST00000356341
12a
ENSE00000989702
chr11:
77070062-77069943
120
PAK1_HUMAN
160-199
40
0
-
-
1.13d
ENST00000356341
13d
ENSE00000989704
chr11:
77066887-77066713
175
PAK1_HUMAN
200-258
59
1
A:249-258
10
1.14a
ENST00000356341
14a
ENSE00000989705
chr11:
77064644-77064581
64
PAK1_HUMAN
258-279
22
1
A:258-279
22
1.15c
ENST00000356341
15c
ENSE00000989706
chr11:
77060332-77060284
49
PAK1_HUMAN
279-295
17
1
A:279-295
17
1.17b
ENST00000356341
17b
ENSE00001773725
chr11:
77054976-77054864
113
PAK1_HUMAN
296-333
38
1
A:296-333
38
1.18
ENST00000356341
18
ENSE00001665540
chr11:
77051808-77051691
118
PAK1_HUMAN
333-372
40
1
A:333-372
40
1.19
ENST00000356341
19
ENSE00001693116
chr11:
77048468-77048369
100
PAK1_HUMAN
373-406
34
1
A:373-406
34
1.20c
ENST00000356341
20c
ENSE00000989710
chr11:
77047327-77047131
197
PAK1_HUMAN
406-471
66
1
A:406-471
66
1.21b
ENST00000356341
21b
ENSE00001757209
chr11:
77043912-77043775
138
PAK1_HUMAN
472-517
46
1
A:472-517
46
1.24e
ENST00000356341
24e
ENSE00002141126
chr11:
77034405-77032752
1654
PAK1_HUMAN
518-545
28
1
A:518-541
24
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d3fy0a_ (A:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
pak1
(11)
Human (Homo sapiens) [TaxId: 9606]
(11)
1a
d3fy0a_
A:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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