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3FXU
Asym. Unit
Info
Asym.Unit (104 KB)
Biol.Unit 1 (191 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TSAR IN COMPLEX WITH ITS EFFECTOR P-TOLUENESULFONATE
Authors
:
D. Monferrer, T. Tralau, M. A. Kertesz, A. Kikhney, D. Svergun, I. Uson
Date
:
21 Jan 09 (Deposition) - 26 Jan 10 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Lysr-Type, Transcriptional Regulator, Lttr, Tsar, Whth, Dna-Binding, Transcription, Transcription Regulation, Transcription Regulator
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Monferrer, T. Tralau, M. A. Kertesz, I. Dix, M. Sola, I. Uson
Structural Studies On The Full-Length Lysr-Type Regulator Tsar From Comamonas Testosteroni T-2 Reveal A Novel Open Conformation Of The Tetrameric Lttr Fold
Mol. Microbiol. V. 75 1199 2010
(for further references see the
PDB file header
)
[
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Hetero Components
(5, 20)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
2a: FORMIC ACID (FMTa)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
4a: IMIDAZOLE (IMDa)
5a: PARA-TOLUENE SULFONATE (TSUa)
5b: PARA-TOLUENE SULFONATE (TSUb)
5c: PARA-TOLUENE SULFONATE (TSUc)
5d: PARA-TOLUENE SULFONATE (TSUd)
5e: PARA-TOLUENE SULFONATE (TSUe)
5f: PARA-TOLUENE SULFONATE (TSUf)
5g: PARA-TOLUENE SULFONATE (TSUg)
5h: PARA-TOLUENE SULFONATE (TSUh)
5i: PARA-TOLUENE SULFONATE (TSUi)
5j: PARA-TOLUENE SULFONATE (TSUj)
5k: PARA-TOLUENE SULFONATE (TSUk)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
3
Ligand/Ion
CHLORIDE ION
2
FMT
1
Ligand/Ion
FORMIC ACID
3
GOL
4
Ligand/Ion
GLYCEROL
4
IMD
1
Ligand/Ion
IMIDAZOLE
5
TSU
11
Ligand/Ion
PARA-TOLUENE SULFONATE
[
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:52 , LYS A:53 , HOH A:358 , HOH B:358
BINDING SITE FOR RESIDUE TSU A 1001
02
AC2
SOFTWARE
LYS A:53 , ARG A:54 , GLN A:175 , HIS A:176 , ASN A:180 , ARG B:289
BINDING SITE FOR RESIDUE TSU A 1002
03
AC3
SOFTWARE
SER A:18 , LEU A:19 , ARG A:20 , ARG A:51 , GLY A:55 , VAL A:56 , ASN A:180
BINDING SITE FOR RESIDUE TSU A 1003
04
AC4
SOFTWARE
SER A:99 , PRO A:100 , ALA A:101 , MET A:129 , ALA A:148 , SER A:196 , ALA A:197 , ILE A:204 , ILE A:270 , TSU A:1006 , GOL A:3001
BINDING SITE FOR RESIDUE TSU A 1004
05
AC5
SOFTWARE
ALA A:101 , TYR A:164 , SER A:166 , ASP A:167 , PRO A:243 , ARG A:244 , THR A:245 , HOH A:394 , TSU A:1004
BINDING SITE FOR RESIDUE TSU A 1006
06
AC6
SOFTWARE
ALA A:149 , HIS A:150 , PRO A:268 , THR A:269 , HOH A:393
BINDING SITE FOR RESIDUE TSU A 1008
07
AC7
SOFTWARE
ALA A:98 , SER A:99 , PRO A:100 , ASP A:127 , GLY A:128 , MET A:129
BINDING SITE FOR RESIDUE IMD A 2001
08
AC8
SOFTWARE
SER A:195 , SER A:196 , ALA A:197 , GLY A:202 , ALA A:203 , ILE A:204 , ILE A:205 , THR A:241 , TSU A:1004
BINDING SITE FOR RESIDUE GOL A 3001
09
AC9
SOFTWARE
LEU A:227 , PRO A:230 , ASN A:250 , ALA A:251 , HOH A:323 , HOH A:380 , LEU B:104 , LEU B:246 , ARG B:249 , ASN B:250
BINDING SITE FOR RESIDUE GOL A 3002
10
BC1
SOFTWARE
ALA A:185 , ARG B:116 , TSU B:1009
BINDING SITE FOR RESIDUE GOL A 3003
11
BC2
SOFTWARE
ALA A:46 , ARG B:87
BINDING SITE FOR RESIDUE CL A 5002
12
BC3
SOFTWARE
SER B:99 , PRO B:100 , ALA B:101 , MET B:129 , ALA B:148 , SER B:196 , ILE B:204 , ILE B:270 , HOH B:382
BINDING SITE FOR RESIDUE TSU B 1005
13
BC4
SOFTWARE
ALA B:105 , TYR B:164 , SER B:166 , ASP B:167 , ARG B:244 , THR B:245
BINDING SITE FOR RESIDUE TSU B 1007
14
BC5
SOFTWARE
MET A:178 , GLU A:186 , HOH A:336 , GOL A:3003 , SER B:113 , ARG B:116 , GLU B:117 , TRP B:290
BINDING SITE FOR RESIDUE TSU B 1009
15
BC6
SOFTWARE
LEU A:111 , ALA A:115 , VAL A:123 , ARG B:191 , GLY B:220 , LEU B:221 , SER B:236 , ASP B:237 , LEU B:238
BINDING SITE FOR RESIDUE TSU B 1010
16
BC7
SOFTWARE
HIS A:152 , ARG A:199 , HOH A:417 , HIS B:152 , ARG B:199 , HOH B:385
BINDING SITE FOR RESIDUE TSU B 1011
17
BC8
SOFTWARE
ARG A:20 , ARG A:51 , HOH A:379 , TRP B:90 , GLU B:117 , PHE B:118
BINDING SITE FOR RESIDUE GOL B 3004
18
BC9
SOFTWARE
LYS A:3 , LYS B:3 , LEU B:4 , GLN B:5
BINDING SITE FOR RESIDUE FMT B 4001
19
CC1
SOFTWARE
ARG B:289
BINDING SITE FOR RESIDUE CL B 5001
20
CC2
SOFTWARE
HIS B:150 , ALA B:197 , PRO B:198 , ARG B:199
BINDING SITE FOR RESIDUE CL B 5003
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: HTH_LYSR (A:3-59,B:3-59)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HTH_LYSR
PS50931
LysR-type HTH domain profile.
TSAR_COMTE
1-58
2
A:3-59
B:3-59
[
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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Info
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Sorry, no Info available
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Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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Asym.Unit (104 KB)
Header - Asym.Unit
Biol.Unit 1 (191 KB)
Header - Biol.Unit 1
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