PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
3FXR
Asym. Unit
Info
Asym.Unit (106 KB)
Biol.Unit 1 (196 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF TSAR IN COMPLEX WITH SULFATE
Authors
:
D. Monferrer, T. Tralau, M. A. Kertesz, A. Kikhney, D. Svergun, I. Uson
Date
:
21 Jan 09 (Deposition) - 26 Jan 10 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Lysr-Type, Transcriptional Regulator, Lttr, Tsar, Whth, Dna-Binding, Transcription, Transcription Regulation, Transcription Regulator
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Monferrer, T. Tralau, M. A. Kertesz, I. Dix, M. Sola, I. Uson
Structural Studies On The Full-Length Lysr-Type Regulator Tsar From Comamonas Testosteroni T-2 Reveal A Novel Open Conformation Of The Tetrameric Lttr Fold
Mol. Microbiol. V. 75 1199 2010
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 14)
Info
All Hetero Components
1a: ASCORBIC ACID (ASCa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ASC
1
Ligand/Ion
ASCORBIC ACID
2
GOL
3
Ligand/Ion
GLYCEROL
3
SO4
10
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:149 , LYS A:151 , THR A:269 , TYR A:271 , HOH A:385 , HOH A:390 , ARG B:211
BINDING SITE FOR RESIDUE SO4 A 1002
02
AC2
SOFTWARE
SER A:18 , LEU A:19 , ARG A:20 , ARG A:51 , GLY A:55
BINDING SITE FOR RESIDUE SO4 A 1003
03
AC3
SOFTWARE
ALA A:101 , TYR A:164 , SER A:166 , ASP A:167 , PRO A:243 , ARG A:244 , THR A:245 , HOH A:336
BINDING SITE FOR RESIDUE SO4 A 1004
04
AC4
SOFTWARE
ARG A:77 , ARG A:78
BINDING SITE FOR RESIDUE SO4 A 1006
05
AC5
SOFTWARE
ARG A:199 , HOH A:355 , HOH A:385 , HIS B:150 , ARG B:199
BINDING SITE FOR RESIDUE SO4 A 1008
06
AC6
SOFTWARE
HIS A:235 , PHE A:252 , GLN A:255 , ARG B:249
BINDING SITE FOR RESIDUE SO4 A 1009
07
AC7
SOFTWARE
ARG A:249 , HIS B:235 , PHE B:252 , GLN B:255
BINDING SITE FOR RESIDUE SO4 A 1010
08
AC8
SOFTWARE
LEU A:227 , ALA A:228 , PRO A:230 , GLY A:231 , ASN A:250 , ALA A:251 , PHE A:252 , HOH A:307 , LEU B:104 , ARG B:249
BINDING SITE FOR RESIDUE GOL A 2001
09
AC9
SOFTWARE
HIS A:150 , ARG A:199 , ALA A:203 , ILE A:204 , ASN A:207 , ARG A:211 , PRO A:266 , PRO A:268 , HOH A:390 , HOH A:468
BINDING SITE FOR RESIDUE ASC A 3001
10
BC1
SOFTWARE
ARG A:211 , HOH A:355 , LYS B:151 , THR B:269 , TYR B:271 , HOH B:332 , HOH B:408
BINDING SITE FOR RESIDUE SO4 B 1001
11
BC2
SOFTWARE
LEU A:2 , LYS A:3 , LYS B:3 , LEU B:4 , GLN B:5 , HOH B:374
BINDING SITE FOR RESIDUE SO4 B 1005
12
BC3
SOFTWARE
HIS B:150 , ARG B:199 , ALA B:203 , ILE B:204 , ASN B:207 , ARG B:211 , HOH B:319
BINDING SITE FOR RESIDUE SO4 B 1007
13
BC4
SOFTWARE
ARG B:78 , ASP B:143 , ARG B:274 , LEU B:278 , PRO B:279 , VAL B:280 , THR B:281 , HOH B:361 , HOH B:364
BINDING SITE FOR RESIDUE GOL B 2002
14
BC5
SOFTWARE
TYR A:212 , ASP A:263 , TYR B:164 , VAL B:165
BINDING SITE FOR RESIDUE GOL B 2003
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: HTH_LYSR (A:3-59,B:3-59)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HTH_LYSR
PS50931
LysR-type HTH domain profile.
TSAR_COMTE
1-58
2
A:3-59
B:3-59
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_3fxrA01 (A:1-92)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
'winged helix' repressor DNA binding domain
(507)
Pseudomonas testosteroni (Comamonas testosteroni)
(1)
1a
3fxrA01
A:1-92
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (106 KB)
Header - Asym.Unit
Biol.Unit 1 (196 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
3FXR
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
