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Asym. Unit
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Asym.Unit (68 KB)
Biol.Unit 1 (63 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN PROTEIN PHOSPHATASE 1A (PPM1A) BOUND WITH PHOSPHATE AT 3 MM OF MN2+
Authors
:
T. Hu, L. Wang, K. Wang, H. Jiang, X. Shen
Date
:
21 Jan 09 (Deposition) - 26 Jan 10 (Release) - 26 Jan 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Phosphatase, Alternative Splicing, Hydrolase, Magnesium, Manganese, Metal-Binding, Phosphoprotein, Protein Phosphatase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Hu, L. Wang, K. Wang, J. Chen, H. Jiang, X. Shen
Structural Basis For The Mn2+-Dependent Activation Of Human Ppm1A
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: MANGANESE (II) ION (MNa)
1b: MANGANESE (II) ION (MNb)
2a: PHOSPHATE ION (PO4a)
2b: PHOSPHATE ION (PO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MN
2
Ligand/Ion
MANGANESE (II) ION
2
PO4
2
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:60 , ASP A:239 , ASP A:282 , HOH A:435 , HOH A:554 , HOH A:620
BINDING SITE FOR RESIDUE MN A 391
2
AC2
SOFTWARE
ASP A:60 , GLY A:61 , HOH A:402 , HOH A:416 , HOH A:553 , HOH A:554
BINDING SITE FOR RESIDUE MN A 392
3
AC3
SOFTWARE
ARG A:33 , HIS A:62 , GLU A:300 , LYS A:303 , HOH A:485 , HOH A:553 , HOH A:554 , HOH A:596 , HOH A:620
BINDING SITE FOR RESIDUE PO4 A 393
4
AC4
SOFTWARE
ASN A:188 , ASP A:201 , TYR A:202
BINDING SITE FOR RESIDUE PO4 A 394
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: PPM_2 (A:23-291)
2: PPM_1 (A:55-63)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PPM_2
PS51746
PPM-type phosphatase domain profile.
PPM1A_HUMAN
23-291
1
A:23-291
2
PPM_1
PS01032
PPM-type phosphatase domain signature.
PPM1A_HUMAN
55-63
1
A:55-63
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Exons
(4, 4)
Info
All Exons
Exon 1.9f (A:2-278)
Exon 1.10a (A:279-318)
Exon 1.11 (A:318-354 (gaps))
Exon 1.12 (A:354-368)
View:
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All Exon Boundaries
1: Boundary 1.2b/1.9f
2: Boundary 1.9f/1.10a
3: Boundary 1.10a/1.11
4: Boundary 1.11/1.12
5: Boundary 1.12/1.13e
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2b
ENST00000395076
2b
ENSE00001871344
chr14:
60715986-60716395
410
PPM1A_HUMAN
-
0
0
-
-
1.9f
ENST00000395076
9f
ENSE00001642202
chr14:
60749402-60750255
854
PPM1A_HUMAN
1-278
278
1
A:2-278
277
1.10a
ENST00000395076
10a
ENSE00001228994
chr14:
60752342-60752459
118
PPM1A_HUMAN
279-318
40
1
A:279-318
40
1.11
ENST00000395076
11
ENSE00001094885
chr14:
60756524-60756632
109
PPM1A_HUMAN
318-354
37
1
A:318-354 (gaps)
37
1.12
ENST00000395076
12
ENSE00001094888
chr14:
60758115-60758172
58
PPM1A_HUMAN
354-373
20
1
A:354-368
15
1.13e
ENST00000395076
13e
ENSE00001818583
chr14:
60759171-60765805
6635
PPM1A_HUMAN
374-382
9
0
-
-
[
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d3fxja2 (A:297-368)
2a: SCOP_d3fxja1 (A:2-296)
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)
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)
(
)
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(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Another 3-helical bundle
(18)
Superfamily
:
Protein serine/threonine phosphatase 2C, C-terminal domain
(6)
Family
:
automated matches
(5)
Protein domain
:
automated matches
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d3fxja2
A:297-368
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
PP2C-like
(16)
Superfamily
:
PP2C-like
(16)
Family
:
PP2C-like
(7)
Protein domain
:
automated matches
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
2a
d3fxja1
A:2-296
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_3fxjA01 (A:2-295)
2a: CATH_3fxjA02 (A:296-368)
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)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
4-Layer Sandwich
(459)
Topology
:
Phosphatase 2c; domain 1
(23)
Homologous Superfamily
:
Phosphatase 2c; Domain 1
(23)
Human (Homo sapiens)
(11)
1a
3fxjA01
A:2-295
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
Phosphatase 2C; domain 2
(6)
Human (Homo sapiens)
(6)
2a
3fxjA02
A:296-368
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Pfam Domains
(0, 0)
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all PFAM domains
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Chain A
Asymmetric Unit 1
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