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Asym. Unit
Info
Asym.Unit (54 KB)
Biol.Unit 1 (24 KB)
Biol.Unit 2 (24 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A REDESIGNED TPR PROTEIN, T-MOD(VMY), IN COMPLEX WITH MEEVF PEPTIDE
Authors
:
M. E. Jackrel, R. Valverde, L. Regan
Date
:
19 Jan 09 (Deposition) - 21 Apr 09 (Release) - 10 Aug 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Tetratricopeptide Repeat Protein (Tpr), Protein-Peptide Complex, Designed Protein, Tpr, Nucleus, Phosphoprotein, Tpr Repeat, Chaperone
(Keyword Search:
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)
Reference
:
M. E. Jackrel, R. Valverde, L. Regan
Redesign Of A Protein-Peptide Interaction: Characterization And Applications
Protein Sci. V. 18 762 2009
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
1b: ACETYL GROUP (ACEb)
2a: NICKEL (II) ION (NIa)
2b: NICKEL (II) ION (NIb)
2c: NICKEL (II) ION (NIc)
2d: NICKEL (II) ION (NId)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACE
2
Mod. Amino Acid
ACETYL GROUP
2
NI
4
Ligand/Ion
NICKEL (II) ION
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:36 , HOH A:188
BINDING SITE FOR RESIDUE NI A 3
2
AC2
SOFTWARE
HOH A:94 , HOH A:97 , HIS A:247 , HIS A:321 , LYS A:325
BINDING SITE FOR RESIDUE NI A 5
3
AC3
SOFTWARE
ARG B:297 , HIS B:330
BINDING SITE FOR RESIDUE NI B 2
4
AC4
SOFTWARE
HOH B:25 , HOH B:83 , HOH B:90 , HIS B:247 , HIS B:321 , LYS B:325
BINDING SITE FOR RESIDUE NI B 4
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: TPR (-|-|-|A:225-258,B:225-258|A:259-29...)
2: TPR_REGION (-|A:225-349,B:225-349)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TPR
PS50005
TPR repeat profile.
STIP1_HUMAN
4-37
38-71
72-105
225-258
259-292
300-333
360-393
394-427
428-461
6
-
-
-
A:225-258
B:225-258
A:259-292
B:259-292
A:300-333
B:300-333
-
-
-
2
TPR_REGION
PS50293
TPR repeat region circular profile.
STIP1_HUMAN
4-105
225-461
2
-
A:225-349
B:225-349
[
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Exons
(6, 12)
Info
All Exons
Exon 1.6 (A:222-224 | B:222-224)
Exon 1.7 (A:225-267 | B:225-267)
Exon 1.8 (A:267-301 | B:267-301)
Exon 1.9 (A:301-341 | B:301-341)
Exon 1.10 (A:342-349 | B:342-349)
Exon 2.11d (C:0-5 | D:0-5)
View:
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All Exon Boundaries
1: Boundary 1.5/1.6
2: Boundary 1.6/1.7
3: Boundary 1.7/1.8
4: Boundary 1.8/1.9
5: Boundary 1.9/1.10
6: Boundary 1.10/1.11
7: Boundary 2.10/2.11d
8: Boundary 2.11d/2.12
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2
ENST00000305218
2
ENSE00001303761
chr11:
63953587-63953742
156
STIP1_HUMAN
1-3
3
0
-
-
1.3
ENST00000305218
3
ENSE00001292614
chr11:
63960550-63960759
210
STIP1_HUMAN
4-73
70
0
-
-
1.4
ENST00000305218
4
ENSE00001196235
chr11:
63961661-63961802
142
STIP1_HUMAN
74-121
48
0
-
-
1.5
ENST00000305218
5
ENSE00001196229
chr11:
63961951-63962092
142
STIP1_HUMAN
121-168
48
0
-
-
1.6
ENST00000305218
6
ENSE00001196227
chr11:
63963117-63963285
169
STIP1_HUMAN
168-224
57
2
A:222-224
B:222-224
3
3
1.7
ENST00000305218
7
ENSE00001139237
chr11:
63964743-63964869
127
STIP1_HUMAN
225-267
43
2
A:225-267
B:225-267
43
43
1.8
ENST00000305218
8
ENSE00001139229
chr11:
63964965-63965067
103
STIP1_HUMAN
267-301
35
2
A:267-301
B:267-301
35
35
1.9
ENST00000305218
9
ENSE00001139278
chr11:
63965326-63965446
121
STIP1_HUMAN
301-341
41
2
A:301-341
B:301-341
41
41
1.10
ENST00000305218
10
ENSE00001310490
chr11:
63967412-63967508
97
STIP1_HUMAN
342-374
33
2
A:342-349
B:342-349
8
8
1.11
ENST00000305218
11
ENSE00001317889
chr11:
63967641-63967765
125
STIP1_HUMAN
374-415
42
0
-
-
1.12
ENST00000305218
12
ENSE00001169747
chr11:
63970348-63970384
37
STIP1_HUMAN
416-428
13
0
-
-
1.13
ENST00000305218
13
ENSE00001169731
chr11:
63970597-63970700
104
STIP1_HUMAN
428-462
35
0
-
-
1.14
ENST00000305218
14
ENSE00001169722
chr11:
63970922-63971094
173
STIP1_HUMAN
463-520
58
0
-
-
1.15b
ENST00000305218
15b
ENSE00001518832
chr11:
63971526-63972020
495
STIP1_HUMAN
520-543
24
0
-
-
2.1a
ENST00000371646
1a
ENSE00001361028
chr6:
44214824-44214932
109
HS90B_HUMAN
-
0
0
-
-
2.3b
ENST00000371646
3b
ENSE00002201694
chr6:
44216367-44216513
147
HS90B_HUMAN
1-49
49
0
-
-
2.4b
ENST00000371646
4b
ENSE00002189486
chr6:
44217114-44217320
207
HS90B_HUMAN
50-118
69
0
-
-
2.5a
ENST00000371646
5a
ENSE00002183060
chr6:
44217412-44217571
160
HS90B_HUMAN
119-172
54
0
-
-
2.6
ENST00000371646
6
ENSE00002150570
chr6:
44217758-44217891
134
HS90B_HUMAN
172-216
45
0
-
-
2.7
ENST00000371646
7
ENSE00002189784
chr6:
44218028-44218336
309
HS90B_HUMAN
217-319
103
0
-
-
2.8
ENST00000371646
8
ENSE00002147387
chr6:
44218785-44218950
166
HS90B_HUMAN
320-375
56
0
-
-
2.9
ENST00000371646
9
ENSE00001140344
chr6:
44219155-44219345
191
HS90B_HUMAN
375-438
64
0
-
-
2.10
ENST00000371646
10
ENSE00001140336
chr6:
44219474-44219621
148
HS90B_HUMAN
439-488
50
0
-
-
2.11d
ENST00000371646
11d
ENSE00000974672
chr6:
44219736-44220004
269
HS90B_HUMAN
488-577
90
2
C:0-5
D:0-5
6
6
2.12
ENST00000371646
12
ENSE00000974673
chr6:
44220782-44221115
334
HS90B_HUMAN
578-689
112
0
-
-
2.13a
ENST00000371646
13a
ENSE00001427294
chr6:
44221226-44221620
395
HS90B_HUMAN
689-724
36
0
-
-
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Sorry, no Info available
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3fwvA00 (A:222-349)
1b: CATH_3fwvB00 (B:222-349)
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
(320)
Homologous Superfamily
:
[code=1.25.40.10, no name defined]
(42)
Human (Homo sapiens)
(17)
1a
3fwvA00
A:222-349
1b
3fwvB00
B:222-349
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Atom Selection
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Protein & NOT Site
Protein & NOT PROSITE
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Chain B
Chain C
Chain D
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