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Getting 'Exon' information from database.
3FWQ
Asym. Unit
Info
Asym.Unit (244 KB)
Biol.Unit 1 (121 KB)
Biol.Unit 2 (122 KB)
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(1)
Title
:
INACTIVE CONFORMATION OF HUMAN PROTEIN KINASE CK2 CATALYTIC SUBUNIT
Authors
:
K. Niefind, J. Raaf, O. G. Issinger
Date
:
19 Jan 09 (Deposition) - 17 Feb 09 (Release) - 04 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Casein Kinase 2, Protein Kinase Ck2, Eukaryotic Protein Kinases, Inactive Conformation, Atp-Binding, Kinase, Nucleotide-Binding, Phosphoprotein, Serine/Threonine-Protein Kinase, Transferase, Wnt Signaling Pathway
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Raaf, O. G. Issinger, K. Niefind
First Inactive Conformation Of Ck2 Alpha, The Catalytic Subunit Of Protein Kinase Ck2
J. Mol. Biol. V. 386 1212 2009
(for further references see the
PDB file header
)
[
close entry info
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Hetero Components
(3, 9)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
3a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
5
Ligand/Ion
CHLORIDE ION
2
GOL
3
Ligand/Ion
GLYCEROL
3
SO4
1
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:21 , GLU A:22 , GLN A:40 , LEU A:41 , ASP A:103 , HOH A:364
BINDING SITE FOR RESIDUE GOL A 336
2
AC2
SOFTWARE
ARG A:306 , TYR A:307 , ASP A:308 , SER A:311
BINDING SITE FOR RESIDUE GOL A 337
3
AC3
SOFTWARE
ARG A:80 , ARG A:155 , GLU A:180 , TYR A:188 , ASN A:189 , HOH A:498
BINDING SITE FOR RESIDUE SO4 A 338
4
AC4
SOFTWARE
HIS A:148 , ALA A:315 , HOH A:399
BINDING SITE FOR RESIDUE CL A 339
5
AC5
SOFTWARE
LYS A:68 , ILE A:174 , ASP A:175 , HOH A:343
BINDING SITE FOR RESIDUE CL A 340
6
AC6
SOFTWARE
SER A:7 , TYR A:182 , PRO A:184 , GLY A:185 , MET A:208
BINDING SITE FOR RESIDUE CL A 341
7
AC7
SOFTWARE
ASP B:253 , ARG B:278 , ARG B:306 , TYR B:307 , ASP B:308
BINDING SITE FOR RESIDUE GOL B 336
8
AC8
SOFTWARE
VAL B:11 , HIS B:148 , ALA B:315
BINDING SITE FOR RESIDUE CL B 337
9
AC9
SOFTWARE
LYS B:122 , PRO B:159 , HIS B:160
BINDING SITE FOR RESIDUE CL B 338
[
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]
SAPs(SNPs)/Variants
(4, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_077045 (R47Q, chain A/B, )
2: VAR_077046 (Y50S, chain A/B, )
3: VAR_077047 (D175G, chain A/B, )
4: VAR_077048 (K198R, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_077045
R
47
Q
CSK21_HUMAN
Disease (OCNDS)
869312845
A/B
R
47
Q
2
UniProt
VAR_077046
Y
50
S
CSK21_HUMAN
Disease (OCNDS)
869312849
A/B
Y
50
S
3
UniProt
VAR_077047
D
175
G
CSK21_HUMAN
Disease (OCNDS)
869312848
A/B
D
175
G
4
UniProt
VAR_077048
K
198
R
CSK21_HUMAN
Disease (OCNDS)
869312840
A/B
K
198
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:45-68,B:45-68)
2: PROTEIN_KINASE_ST (A:152-164,B:152-164)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
CSK21_HUMAN
45-68
2
A:45-68
B:45-68
2
PROTEIN_KINASE_ST
PS00108
Serine/Threonine protein kinases active-site signature.
CSK21_HUMAN
152-164
2
A:152-164
B:152-164
[
close PROSITE info
]
Exons
(11, 22)
Info
All Exons
Exon 1.3 (A:2-34 | B:2-34)
Exon 1.4 (A:34-71 | B:34-71)
Exon 1.5 (A:72-105 | B:72-105)
Exon 1.6 (A:106-122 | B:106-122)
Exon 1.7 (A:123-142 | B:123-142)
Exon 1.8 (A:143-170 | B:143-170)
Exon 1.9 (A:171-207 | B:171-207)
Exon 1.10 (A:208-241 | B:208-241)
Exon 1.11b (A:242-275 | B:242-275)
Exon 1.12 (A:275-325 | B:275-325)
Exon 1.13 (A:325-335 | B:325-335)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.1b/1.3
02: Boundary 1.3/1.4
03: Boundary 1.4/1.5
04: Boundary 1.5/1.6
05: Boundary 1.6/1.7
06: Boundary 1.7/1.8
07: Boundary 1.8/1.9
08: Boundary 1.9/1.10
09: Boundary 1.10/1.11b
10: Boundary 1.11b/1.12
11: Boundary 1.12/1.13
12: Boundary 1.13/1.14c
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000349736
1b
ENSE00001937660
chr20:
524465-524316
150
CSK21_HUMAN
-
0
0
-
-
1.3
ENST00000349736
3
ENSE00001709328
chr20:
489304-489095
210
CSK21_HUMAN
1-34
34
2
A:2-34
B:2-34
33
33
1.4
ENST00000349736
4
ENSE00001688643
chr20:
485873-485762
112
CSK21_HUMAN
34-71
38
2
A:34-71
B:34-71
38
38
1.5
ENST00000349736
5
ENSE00001705871
chr20:
480578-480477
102
CSK21_HUMAN
72-105
34
2
A:72-105
B:72-105
34
34
1.6
ENST00000349736
6
ENSE00001598088
chr20:
479949-479899
51
CSK21_HUMAN
106-122
17
2
A:106-122
B:106-122
17
17
1.7
ENST00000349736
7
ENSE00001618963
chr20:
478424-478365
60
CSK21_HUMAN
123-142
20
2
A:123-142
B:123-142
20
20
1.8
ENST00000349736
8
ENSE00000655095
chr20:
476446-476363
84
CSK21_HUMAN
143-170
28
2
A:143-170
B:143-170
28
28
1.9
ENST00000349736
9
ENSE00000655092
chr20:
473008-472898
111
CSK21_HUMAN
171-207
37
2
A:171-207
B:171-207
37
37
1.10
ENST00000349736
10
ENSE00001666435
chr20:
470525-470424
102
CSK21_HUMAN
208-241
34
2
A:208-241
B:208-241
34
34
1.11b
ENST00000349736
11b
ENSE00000655089
chr20:
469422-469322
101
CSK21_HUMAN
242-275
34
2
A:242-275
B:242-275
34
34
1.12
ENST00000349736
12
ENSE00000655088
chr20:
468219-468071
149
CSK21_HUMAN
275-325
51
2
A:275-325
B:275-325
51
51
1.13
ENST00000349736
13
ENSE00000655087
chr20:
467106-467020
87
CSK21_HUMAN
325-354
30
2
A:325-335
B:325-335
11
11
1.14c
ENST00000349736
14c
ENSE00001891680
chr20:
464720-461741
2980
CSK21_HUMAN
354-391
38
0
-
-
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3fwqa_ (A:)
1b: SCOP_d3fwqb_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
automated matches
(542)
Human (Homo sapiens) [TaxId: 9606]
(452)
1a
d3fwqa_
A:
1b
d3fwqb_
B:
[
close SCOP info
]
CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_3fwqA02 (A:25-115)
1b: CATH_3fwqB02 (B:25-115)
2a: CATH_3fwqA01 (A:7-24,A:116-331)
2b: CATH_3fwqB01 (B:7-24,B:116-331)
View:
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Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Human (Homo sapiens)
(1036)
1a
3fwqA02
A:25-115
1b
3fwqB02
B:25-115
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Transferase(Phosphotransferase); domain 1
(1379)
Homologous Superfamily
:
Transferase(Phosphotransferase) domain 1
(1379)
Human (Homo sapiens)
(1049)
2a
3fwqA01
A:7-24,A:116-331
2b
3fwqB01
B:7-24,B:116-331
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
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]
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(currently selected atoms:
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Protein & NOT PROSITE
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Asymmetric Unit 1
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