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3FW3
Asym. Unit
Info
Asym.Unit (93 KB)
Biol.Unit 1 (45 KB)
Biol.Unit 2 (46 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF SOLUBLE DOMAIN OF CA4 IN COMPLEX WITH DORZOLAMIDE
Authors
:
S. E. Greasley, R. A. A. Ferre, R. Paz, J. Wickersham
Date
:
16 Jan 09 (Deposition) - 01 Dec 09 (Release) - 12 May 10 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.72
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Structure-Based Drug Design. Small Molecule Complex. Co-Crystal, Cell Membrane, Disease Mutation, Glycoprotein, Gpi-Anchor, Lipoprotein, Lyase, Membrane, Metal-Binding, Polymorphism, Retinitis Pigmentosa, Sensory Transduction, Vision, Zinc
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
W. Vernier, W. Chong, D. Rewolinski, S. Greasley, T. Pauly, M. Shaw, D. Dinh, R. A. Ferre, S. Nukui, M. Ornelas, E. Reyner
Thioether Benzenesulfonamide Inhibitors Of Carbonic Anhydrases Ii And Iv: Structure-Based Drug Design, Synthesis, And Biological Evaluation.
Bioorg. Med. Chem. V. 18 3307 2010
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Hetero Components
(4, 7)
Info
All Hetero Components
1a: (4S-TRANS)-4-(ETHYLAMINO)-5,6-DIHY... (ETSa)
1b: (4S-TRANS)-4-(ETHYLAMINO)-5,6-DIHY... (ETSb)
2a: ALPHA-D-GLUCOSE (GLCa)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ETS
2
Ligand/Ion
(4S-TRANS)-4-(ETHYLAMINO)-5,6-DIHYDRO-6-METHYL-4H-THIENO(2,3-B)THIOPYRAN-2-SULFONAMIDE-7,7-DIOXIDE
2
GLC
1
Ligand/Ion
ALPHA-D-GLUCOSE
3
SO4
2
Ligand/Ion
SULFATE ION
4
ZN
2
Ligand/Ion
ZINC ION
[
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:94 , HIS A:96 , HIS A:119 , ETS A:302
BINDING SITE FOR RESIDUE ZN A 300
2
AC2
SOFTWARE
HIS A:64 , GLN A:92 , HIS A:94 , HIS A:96 , HIS A:119 , VAL A:121 , LEU A:198 , THR A:199 , THR A:200 , TRP A:209 , ZN A:300 , SO4 A:305
BINDING SITE FOR RESIDUE ETS A 302
3
AC3
SOFTWARE
GLY A:151 , THR A:151A , GLN A:152 , ASN A:154 , GLN A:217 , HOH A:427 , HOH A:574 , HOH A:660
BINDING SITE FOR RESIDUE GLC A 304
4
AC4
SOFTWARE
ASN A:62 , MET A:67 , GLN A:92 , ETS A:302 , HOH A:550
BINDING SITE FOR RESIDUE SO4 A 305
5
AC5
SOFTWARE
HIS B:94 , HIS B:96 , HIS B:119 , ETS B:303
BINDING SITE FOR RESIDUE ZN B 301
6
AC6
SOFTWARE
GLN B:92 , HIS B:94 , HIS B:96 , HIS B:119 , VAL B:121 , ILE B:141 , LEU B:198 , THR B:199 , THR B:200 , ZN B:301 , SO4 B:306
BINDING SITE FOR RESIDUE ETS B 303
7
AC7
SOFTWARE
ASN B:62 , MET B:67 , GLN B:92 , ETS B:303
BINDING SITE FOR RESIDUE SO4 B 306
[
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SAPs(SNPs)/Variants
(4, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_071431 (R46H, chain A/B, )
2: VAR_071432 (N154K, chain A/B, )
3: VAR_024750 (R193S, chain A/B, )
4: VAR_048680 (V211L, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_071431
R
69
H
CAH4_HUMAN
Disease (RP17)
---
A/B
R
46
H
2
UniProt
VAR_071432
N
177
K
CAH4_HUMAN
Polymorphism
---
A/B
N
154
K
3
UniProt
VAR_024750
R
219
S
CAH4_HUMAN
Disease (RP17)
---
A/B
R
193
S
4
UniProt
VAR_048680
V
237
L
CAH4_HUMAN
Polymorphism
2229178
A/B
V
211
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: ALPHA_CA_1 (A:105-121,B:105-121)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALPHA_CA_1
PS00162
Alpha-carbonic anhydrases signature.
CAH4_HUMAN
126-142
2
A:105-121
B:105-121
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Exons
(7, 14)
Info
All Exons
Exon 1.2 (A:5-12 (gaps) | B:4-12)
Exon 1.3 (A:12-66 (gaps) | B:12-66 (gaps))
Exon 1.4 (A:66-117 (gaps) | B:66-117 (gaps))
Exon 1.5 (A:118-149 (gaps) | B:118-149 (gaps...)
Exon 1.6 (A:150-171 | B:150-171)
Exon 1.7 (A:171-222 | B:171-222)
Exon 1.8 (A:223-259 (gaps) | B:223-259 (gaps...)
View:
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All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
5: Boundary 1.5/1.6
6: Boundary 1.6/1.7
7: Boundary 1.7/1.8
8: Boundary 1.8/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000300900
1
ENSE00001112952
chr17:
58227297-58227453
157
CAH4_HUMAN
1-20
20
0
-
-
1.2
ENST00000300900
2
ENSE00001112957
chr17:
58232675-58232728
54
CAH4_HUMAN
20-38
19
2
A:5-12 (gaps)
B:4-12
16
17
1.3
ENST00000300900
3
ENSE00001112956
chr17:
58233921-58234076
156
CAH4_HUMAN
38-90
53
2
A:12-66 (gaps)
B:12-66 (gaps)
56
56
1.4
ENST00000300900
4
ENSE00001112955
chr17:
58234788-58234933
146
CAH4_HUMAN
90-138
49
2
A:66-117 (gaps)
B:66-117 (gaps)
52
52
1.5
ENST00000300900
5
ENSE00001112954
chr17:
58235051-58235149
99
CAH4_HUMAN
139-171
33
2
A:118-149 (gaps)
B:118-149 (gaps)
33
33
1.6
ENST00000300900
6
ENSE00001619115
chr17:
58235422-58235488
67
CAH4_HUMAN
172-194
23
2
A:150-171
B:150-171
23
23
1.7
ENST00000300900
7
ENSE00001655816
chr17:
58235644-58235807
164
CAH4_HUMAN
194-248
55
2
A:171-222
B:171-222
55
55
1.8
ENST00000300900
8
ENSE00001801465
chr17:
58236591-58236901
311
CAH4_HUMAN
249-312
64
2
A:223-259 (gaps)
B:223-259 (gaps)
38
38
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3fw3a_ (A:)
1b: SCOP_d3fw3b_ (B:)
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(
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Carbonic anhydrase
(525)
Superfamily
:
Carbonic anhydrase
(525)
Family
:
Carbonic anhydrase
(513)
Protein domain
:
Carbonic anhydrase
(499)
Human (Homo sapiens), isozyme IV [TaxId: 9606]
(4)
1a
d3fw3a_
A:
1b
d3fw3b_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_3fw3B00 (B:4-259)
1b: CATH_3fw3A00 (A:5-259)
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(
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)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Carbonic Anhydrase II
(332)
Homologous Superfamily
:
Carbonic Anhydrase II
(332)
Human (Homo sapiens)
(309)
1a
3fw3B00
B:4-259
1b
3fw3A00
A:5-259
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Sorry, no Info available
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Asym.Unit (93 KB)
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