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3FVU
Asym. Unit
Info
Asym.Unit (154 KB)
Biol.Unit 1 (149 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN KYNURENINE AMINOTRANSFERASE I IN COMPLEX WITH INDOLE-3-ACETIC ACID
Authors
:
Q. Han, H. Robinson, T. Cai, D. A. Tagle, J. Li
Date
:
16 Jan 09 (Deposition) - 19 May 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.55
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Alpha Beta Protein, Plp Dependent Protein, Aminotransferase, Lyase, Pyridoxal Phosphate, Transferase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Q. Han, H. Robinson, T. Cai, D. A. Tagle, J. Li
Structural Insight Into The Inhibition Of Human Kynurenine Aminotransferase I/Glutamine Transaminase K
J. Med. Chem. V. 52 2786 2009
[
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Hetero Components
(4, 11)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
2a: 1H-INDOL-3-YLACETIC ACID (IACa)
2b: 1H-INDOL-3-YLACETIC ACID (IACb)
3a: 2-LYSINE(3-HYDROXY-2-METHYL-5-PHOS... (LLPa)
3b: 2-LYSINE(3-HYDROXY-2-METHYL-5-PHOS... (LLPb)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
5
Ligand/Ion
GLYCEROL
2
IAC
2
Ligand/Ion
1H-INDOL-3-YLACETIC ACID
3
LLP
2
Mod. Amino Acid
2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)
4
NA
2
Ligand/Ion
SODIUM ION
[
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TRP A:18 , GLY A:36 , TYR A:101 , ASN A:185 , LLP A:247 , ARG A:398 , GOL A:425 , TYR B:63 , PHE B:278 , HIS B:279
BINDING SITE FOR RESIDUE IAC A 423
2
AC2
SOFTWARE
ALA A:77 , SER A:78 , GLU A:87 , ILE A:88 , HOH A:588 , HOH A:625 , LYS B:23
BINDING SITE FOR RESIDUE GOL A 424
3
AC3
SOFTWARE
GLN A:35 , GLY A:36 , IAC A:423 , HOH A:686 , HIS B:279 , HOH B:654
BINDING SITE FOR RESIDUE GOL A 425
4
AC4
SOFTWARE
PRO A:43 , ASP A:44 , PHE A:45 , HOH A:699
BINDING SITE FOR RESIDUE GOL A 426
5
AC5
SOFTWARE
HIS A:206 , HOH A:431 , HOH A:438 , HOH A:537 , HOH A:641 , HOH A:702
BINDING SITE FOR RESIDUE NA A 427
6
AC6
SOFTWARE
TYR A:63 , PHE A:278 , HIS A:279 , TRP B:18 , GLY B:36 , TYR B:101 , PHE B:125 , ASN B:185 , PHE B:339 , ARG B:398 , GOL B:424
BINDING SITE FOR RESIDUE IAC B 423
7
AC7
SOFTWARE
HIS A:279 , VAL B:22 , GLY B:36 , IAC B:423 , HOH B:526 , HOH B:628 , HOH B:700
BINDING SITE FOR RESIDUE GOL B 424
8
AC8
SOFTWARE
MET B:59 , LEU B:60 , GLN B:62 , TYR B:63 , THR B:64 , TYR B:69 , HOH B:662
BINDING SITE FOR RESIDUE GOL B 425
9
AC9
SOFTWARE
HIS B:206 , HOH B:447 , HOH B:529 , HOH B:530 , HOH B:658 , HOH B:703
BINDING SITE FOR RESIDUE NA B 426
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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Exons
(12, 24)
Info
All Exons
Exon 1.5b (A:4-18 | B:4-18)
Exon 1.6 (A:18-67 | B:18-67)
Exon 1.9b (A:68-117 | B:68-117)
Exon 1.10 (A:118-146 | B:118-146)
Exon 1.11c (A:147-189 | B:147-189)
Exon 1.12 (A:190-230 | B:190-230)
Exon 1.13c (A:230-255 | B:230-255)
Exon 1.14 (A:256-285 | B:256-285)
Exon 1.15a (A:286-348 | B:286-348)
Exon 1.16a (A:348-374 | B:348-374)
Exon 1.17 (A:375-403 | B:375-403)
Exon 1.18d (A:404-422 | B:404-422)
View:
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All Exon Boundaries
01: Boundary 1.2c/1.5b
02: Boundary 1.5b/1.6
03: Boundary 1.6/1.9b
04: Boundary 1.9b/1.10
05: Boundary 1.10/1.11c
06: Boundary 1.11c/1.12
07: Boundary 1.12/1.13c
08: Boundary 1.13c/1.14
09: Boundary 1.14/1.15a
10: Boundary 1.15a/1.16a
11: Boundary 1.16a/1.17
12: Boundary 1.17/1.18d
13: Boundary 1.18d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2c
ENST00000302586
2c
ENSE00001851283
chr9:
131644332-131644176
157
KAT1_HUMAN
-
0
0
-
-
1.5b
ENST00000302586
5b
ENSE00002195023
chr9:
131607690-131607632
59
KAT1_HUMAN
1-18
18
2
A:4-18
B:4-18
15
15
1.6
ENST00000302586
6
ENSE00001143432
chr9:
131605080-131604933
148
KAT1_HUMAN
18-67
50
2
A:18-67
B:18-67
50
50
1.9b
ENST00000302586
9b
ENSE00002146235
chr9:
131600646-131600497
150
KAT1_HUMAN
68-117
50
2
A:68-117
B:68-117
50
50
1.10
ENST00000302586
10
ENSE00001626071
chr9:
131600416-131600330
87
KAT1_HUMAN
118-146
29
2
A:118-146
B:118-146
29
29
1.11c
ENST00000302586
11c
ENSE00001784290
chr9:
131600092-131599964
129
KAT1_HUMAN
147-189
43
2
A:147-189
B:147-189
43
43
1.12
ENST00000302586
12
ENSE00001761291
chr9:
131599201-131599081
121
KAT1_HUMAN
190-230
41
2
A:190-230
B:190-230
41
41
1.13c
ENST00000302586
13c
ENSE00001704435
chr9:
131598352-131598276
77
KAT1_HUMAN
230-255
26
2
A:230-255
B:230-255
26
26
1.14
ENST00000302586
14
ENSE00001738063
chr9:
131598147-131598058
90
KAT1_HUMAN
256-285
30
2
A:256-285
B:256-285
30
30
1.15a
ENST00000302586
15a
ENSE00001595628
chr9:
131597946-131597760
187
KAT1_HUMAN
286-348
63
2
A:286-348
B:286-348
63
63
1.16a
ENST00000302586
16a
ENSE00001756602
chr9:
131597681-131597602
80
KAT1_HUMAN
348-374
27
2
A:348-374
B:348-374
27
27
1.17
ENST00000302586
17
ENSE00001781922
chr9:
131596105-131596019
87
KAT1_HUMAN
375-403
29
2
A:375-403
B:375-403
29
29
1.18d
ENST00000302586
18d
ENSE00001709974
chr9:
131595922-131595392
531
KAT1_HUMAN
404-422
19
2
A:404-422
B:404-422
19
19
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d3fvua_ (A:)
1b: SCOP_d3fvub_ (B:)
View:
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Classes
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(
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(
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(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PLP-dependent transferase-like
(627)
Superfamily
:
PLP-dependent transferases
(625)
Family
:
AAT-like
(184)
Protein domain
:
automated matches
(16)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d3fvua_
A:
1b
d3fvub_
B:
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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