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3FV3
Biol. Unit 6
Info
Asym.Unit (487 KB)
Biol.Unit 1 (67 KB)
Biol.Unit 2 (64 KB)
Biol.Unit 3 (66 KB)
Biol.Unit 4 (69 KB)
Biol.Unit 5 (68 KB)
Biol.Unit 6 (68 KB)
Biol.Unit 7 (68 KB)
Biol.Unit 8 (65 KB)
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(1)
Title
:
SECRETED ASPARTIC PROTEASE 1 FROM CANDIDA PARAPSILOSIS IN COMPLEX WITH PEPSTATIN A
Authors
:
J. Dostal, J. Brynda, O. Hruskova-Heidingsfeldova, I. Sieglova, I. Pi P. Rezacova
Date
:
15 Jan 09 (Deposition) - 19 May 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: B,J (1x)
Biol. Unit 2: C,K (1x)
Biol. Unit 3: D,L (1x)
Biol. Unit 4: E,M (1x)
Biol. Unit 5: F,N (1x)
Biol. Unit 6: G,O (1x)
Biol. Unit 7: H,P (1x)
Biol. Unit 8: A,I (1x)
Keywords
:
Pepstatin A, Secreted Aspartic Protease, Virulence Factor, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Dostal, J. Brynda, O. Hruskova-Heidingsfeldova, I. Sieglova, I. Pichova, P. Rezacova
The Crystal Structure Of The Secreted Aspartic Protease 1 From Candida Parapsilosis In Complex With Pepstatin A
J. Struct. Biol. V. 167 145 2009
[
close entry info
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Hetero Components
(4, 10)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
1k: GLYCEROL (GOLk)
1l: GLYCEROL (GOLl)
1m: GLYCEROL (GOLm)
1n: GLYCEROL (GOLn)
1o: GLYCEROL (GOLo)
1p: GLYCEROL (GOLp)
1q: GLYCEROL (GOLq)
1r: GLYCEROL (GOLr)
1s: GLYCEROL (GOLs)
1t: GLYCEROL (GOLt)
1u: GLYCEROL (GOLu)
1v: GLYCEROL (GOLv)
1w: GLYCEROL (GOLw)
1x: GLYCEROL (GOLx)
1y: GLYCEROL (GOLy)
2a: ISOVALERIC ACID (IVAa)
2b: ISOVALERIC ACID (IVAb)
2c: ISOVALERIC ACID (IVAc)
2d: ISOVALERIC ACID (IVAd)
2e: ISOVALERIC ACID (IVAe)
2f: ISOVALERIC ACID (IVAf)
2g: ISOVALERIC ACID (IVAg)
2h: ISOVALERIC ACID (IVAh)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
3o: SULFATE ION (SO4o)
4a: STATINE (STAa)
4b: STATINE (STAb)
4c: STATINE (STAc)
4d: STATINE (STAd)
4e: STATINE (STAe)
4f: STATINE (STAf)
4g: STATINE (STAg)
4h: STATINE (STAh)
4i: STATINE (STAi)
4j: STATINE (STAj)
4k: STATINE (STAk)
4l: STATINE (STAl)
4m: STATINE (STAm)
4n: STATINE (STAn)
4o: STATINE (STAo)
4p: STATINE (STAp)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
2
Ligand/Ion
GLYCEROL
2
IVA
1
Mod. Amino Acid
ISOVALERIC ACID
3
SO4
5
Ligand/Ion
SULFATE ION
4
STA
2
Mod. Amino Acid
STATINE
[
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Sites
(7, 7)
Info
All Sites
1: CC5 (SOFTWARE)
2: CC6 (SOFTWARE)
3: CC7 (SOFTWARE)
4: CC8 (SOFTWARE)
5: CC9 (SOFTWARE)
6: DC1 (SOFTWARE)
7: DC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
CC5
SOFTWARE
GLY B:57 , THR B:58 , ARG G:249
BINDING SITE FOR RESIDUE SO4 G 340
2
CC6
SOFTWARE
ARG B:249 , GLY G:57 , THR G:58 , HOH G:385 , HOH G:1790
BINDING SITE FOR RESIDUE SO4 G 341
3
CC7
SOFTWARE
LYS G:207 , GLY G:264 , HOH G:386
BINDING SITE FOR RESIDUE SO4 G 342
4
CC8
SOFTWARE
GLY G:184 , LYS G:329 , HOH G:1010 , HOH G:1421
BINDING SITE FOR RESIDUE SO4 G 343
5
CC9
SOFTWARE
GLY G:79 , TYR G:227 , SER G:299 , HOH G:1319 , HOH G:1382
BINDING SITE FOR RESIDUE SO4 G 344
6
DC1
SOFTWARE
LYS G:207 , ALA G:240 , ASP G:261 , THR G:262 , ASN G:280 , TYR G:283 , TRP G:294 , HOH G:357
BINDING SITE FOR RESIDUE GOL G 345
7
DC2
SOFTWARE
THR G:123 , ASN G:139 , TYR G:140 , ASP G:141 , HOH G:368
BINDING SITE FOR RESIDUE GOL G 346
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 3)
Info
All PROSITE Patterns/Profiles
1: PEPTIDASE_A1 (G:14-326)
2: ASP_PROTEASE (G:29-40,G:217-228)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PEPTIDASE_A1
PS51767
Peptidase family A1 domain profile.
CARP1_CANPA
76-389
1
-
-
-
-
-
-
G:14-326
-
2
ASP_PROTEASE
PS00141
Eukaryotic and viral aspartyl proteases active site.
CARP1_CANPA
91-102
279-290
2
-
-
-
-
-
-
G:29-40
-
-
-
-
-
-
-
G:217-228
-
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d3fv3a_ (A:)
1b: SCOP_d3fv3b_ (B:)
1c: SCOP_d3fv3c_ (C:)
1d: SCOP_d3fv3d_ (D:)
1e: SCOP_d3fv3e_ (E:)
1f: SCOP_d3fv3f_ (F:)
1g: SCOP_d3fv3g_ (G:)
1h: SCOP_d3fv3h_ (H:)
View:
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Acid proteases
(1120)
Superfamily
:
Acid proteases
(1120)
Family
:
automated matches
(23)
Protein domain
:
automated matches
(23)
Candida parapsilosis [TaxId: 5480]
(2)
1a
d3fv3a_
A:
1b
d3fv3b_
B:
1c
d3fv3c_
C:
1d
d3fv3d_
D:
1e
d3fv3e_
E:
1f
d3fv3f_
F:
1g
d3fv3g_
G:
1h
d3fv3h_
H:
[
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CATH Domains
(1, 16)
Info
all CATH domains
1a: CATH_3fv3A02 (A:176-339)
1b: CATH_3fv3B02 (B:176-339)
1c: CATH_3fv3B01 (B:1-175)
1d: CATH_3fv3C01 (C:1-175)
1e: CATH_3fv3E01 (E:1-175)
1f: CATH_3fv3F01 (F:1-175)
1g: CATH_3fv3G01 (G:1-175)
1h: CATH_3fv3H01 (H:1-175)
1i: CATH_3fv3C02 (C:176-339)
1j: CATH_3fv3D02 (D:176-339)
1k: CATH_3fv3E02 (E:176-339)
1l: CATH_3fv3F02 (F:176-339)
1m: CATH_3fv3G02 (G:176-339)
1n: CATH_3fv3H02 (H:176-339)
1o: CATH_3fv3D01 (D:1-175)
1p: CATH_3fv3A01 (A:1-175)
View:
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(
)
(
)
Architectures
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Cathepsin D, subunit A; domain 1
(745)
Homologous Superfamily
:
Acid Proteases
(745)
Candida parapsilosis. Organism_taxid: 5480. Strain: p-69.
(1)
1a
3fv3A02
A:176-339
1b
3fv3B02
B:176-339
1c
3fv3B01
B:1-175
1d
3fv3C01
C:1-175
1e
3fv3E01
E:1-175
1f
3fv3F01
F:1-175
1g
3fv3G01
G:1-175
1h
3fv3H01
H:1-175
1i
3fv3C02
C:176-339
1j
3fv3D02
D:176-339
1k
3fv3E02
E:176-339
1l
3fv3F02
F:176-339
1m
3fv3G02
G:176-339
1n
3fv3H02
H:176-339
1o
3fv3D01
D:1-175
1p
3fv3A01
A:1-175
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Asymmetric Unit 1
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