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3FV3
Asym. Unit
Info
Asym.Unit (487 KB)
Biol.Unit 1 (67 KB)
Biol.Unit 2 (64 KB)
Biol.Unit 3 (66 KB)
Biol.Unit 4 (69 KB)
Biol.Unit 5 (68 KB)
Biol.Unit 6 (68 KB)
Biol.Unit 7 (68 KB)
Biol.Unit 8 (65 KB)
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(1)
Title
:
SECRETED ASPARTIC PROTEASE 1 FROM CANDIDA PARAPSILOSIS IN COMPLEX WITH PEPSTATIN A
Authors
:
J. Dostal, J. Brynda, O. Hruskova-Heidingsfeldova, I. Sieglova, I. Pi P. Rezacova
Date
:
15 Jan 09 (Deposition) - 19 May 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: B,J (1x)
Biol. Unit 2: C,K (1x)
Biol. Unit 3: D,L (1x)
Biol. Unit 4: E,M (1x)
Biol. Unit 5: F,N (1x)
Biol. Unit 6: G,O (1x)
Biol. Unit 7: H,P (1x)
Biol. Unit 8: A,I (1x)
Keywords
:
Pepstatin A, Secreted Aspartic Protease, Virulence Factor, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Dostal, J. Brynda, O. Hruskova-Heidingsfeldova, I. Sieglova, I. Pichova, P. Rezacova
The Crystal Structure Of The Secreted Aspartic Protease 1 From Candida Parapsilosis In Complex With Pepstatin A
J. Struct. Biol. V. 167 145 2009
[
close entry info
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Hetero Components
(4, 64)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
1k: GLYCEROL (GOLk)
1l: GLYCEROL (GOLl)
1m: GLYCEROL (GOLm)
1n: GLYCEROL (GOLn)
1o: GLYCEROL (GOLo)
1p: GLYCEROL (GOLp)
1q: GLYCEROL (GOLq)
1r: GLYCEROL (GOLr)
1s: GLYCEROL (GOLs)
1t: GLYCEROL (GOLt)
1u: GLYCEROL (GOLu)
1v: GLYCEROL (GOLv)
1w: GLYCEROL (GOLw)
1x: GLYCEROL (GOLx)
1y: GLYCEROL (GOLy)
2a: ISOVALERIC ACID (IVAa)
2b: ISOVALERIC ACID (IVAb)
2c: ISOVALERIC ACID (IVAc)
2d: ISOVALERIC ACID (IVAd)
2e: ISOVALERIC ACID (IVAe)
2f: ISOVALERIC ACID (IVAf)
2g: ISOVALERIC ACID (IVAg)
2h: ISOVALERIC ACID (IVAh)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
3o: SULFATE ION (SO4o)
4a: STATINE (STAa)
4b: STATINE (STAb)
4c: STATINE (STAc)
4d: STATINE (STAd)
4e: STATINE (STAe)
4f: STATINE (STAf)
4g: STATINE (STAg)
4h: STATINE (STAh)
4i: STATINE (STAi)
4j: STATINE (STAj)
4k: STATINE (STAk)
4l: STATINE (STAl)
4m: STATINE (STAm)
4n: STATINE (STAn)
4o: STATINE (STAo)
4p: STATINE (STAp)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
25
Ligand/Ion
GLYCEROL
2
IVA
8
Mod. Amino Acid
ISOVALERIC ACID
3
SO4
15
Ligand/Ion
SULFATE ION
4
STA
16
Mod. Amino Acid
STATINE
[
close Hetero Component info
]
Sites
(40, 40)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR B:182 , SER B:183 , GLY B:184 , LYS B:329 , HOH B:693 , HOH B:730
BINDING SITE FOR RESIDUE SO4 B 340
02
AC2
SOFTWARE
LYS B:207 , GLY B:264 , THR B:265 , HOH B:512
BINDING SITE FOR RESIDUE GOL B 341
03
AC3
SOFTWARE
SER B:299 , ASP B:300 , ASP B:301 , HOH B:1387 , HOH B:1996 , STA J:506
BINDING SITE FOR RESIDUE GOL B 342
04
AC4
SOFTWARE
LEU B:5 , LYS B:17 , VAL B:18 , SER B:19 , GLN B:26 , THR B:94 , ASN B:96 , GLY B:97
BINDING SITE FOR RESIDUE GOL B 343
05
AC5
SOFTWARE
LYS B:207 , ALA B:240 , ASP B:261 , THR B:262 , ASN B:280 , TYR B:283 , TRP B:294 , HOH B:391
BINDING SITE FOR RESIDUE GOL B 344
06
AC6
SOFTWARE
LYS C:207 , ASP C:261 , THR C:262 , ASN C:280 , TRP C:294 , HOH C:957
BINDING SITE FOR RESIDUE GOL C 340
07
AC7
SOFTWARE
GLY C:79 , SER C:299 , ASP C:301 , HOH C:1884 , STA K:506
BINDING SITE FOR RESIDUE GOL C 341
08
AC8
SOFTWARE
GLY C:184 , LYS C:329
BINDING SITE FOR RESIDUE GOL C 342
09
AC9
SOFTWARE
LYS D:207 , GLY D:208 , GLY D:264 , THR D:265 , HOH D:1700
BINDING SITE FOR RESIDUE SO4 D 340
10
BC1
SOFTWARE
GLY D:57 , THR D:58 , HOH D:1626
BINDING SITE FOR RESIDUE SO4 D 341
11
BC2
SOFTWARE
GLY D:79 , SER D:299 , ASP D:301 , HOH D:377 , HOH D:1553 , HOH D:1797 , HOH D:1879 , STA L:506
BINDING SITE FOR RESIDUE GOL D 342
12
BC3
SOFTWARE
THR D:260 , ASP D:261 , ASN D:280 , TYR D:283 , TRP D:294 , HOH D:684
BINDING SITE FOR RESIDUE GOL D 343
13
BC4
SOFTWARE
GLY D:184 , LYS D:329
BINDING SITE FOR RESIDUE GOL D 344
14
BC5
SOFTWARE
TYR E:182 , SER E:183 , GLY E:184 , LYS E:329 , HOH E:736 , HOH E:1545
BINDING SITE FOR RESIDUE SO4 E 340
15
BC6
SOFTWARE
GLY E:57 , THR E:58 , HOH E:1668 , ARG F:249
BINDING SITE FOR RESIDUE SO4 E 341
16
BC7
SOFTWARE
LYS E:207 , GLY E:264 , THR E:265 , HOH E:1383 , HOH E:1724
BINDING SITE FOR RESIDUE GOL E 342
17
BC8
SOFTWARE
GLY E:79 , SER E:299 , ASP E:301 , HOH E:1023 , HOH E:1327 , HOH E:1488 , HOH E:2040 , STA M:506
BINDING SITE FOR RESIDUE GOL E 343
18
BC9
SOFTWARE
LEU E:5 , LYS E:17 , VAL E:18 , SER E:19 , GLN E:26 , THR E:94 , ASN E:96 , GLY E:97 , HOH E:902
BINDING SITE FOR RESIDUE GOL E 344
19
CC1
SOFTWARE
LYS E:207 , ALA E:240 , ILE E:256 , ASP E:261 , ASN E:280 , TYR E:283 , TRP E:294 , HOH E:403
BINDING SITE FOR RESIDUE GOL E 345
20
CC2
SOFTWARE
TYR F:182 , SER F:183 , GLY F:184 , LYS F:329 , HOH F:477
BINDING SITE FOR RESIDUE SO4 F 340
21
CC3
SOFTWARE
ARG E:249 , GLY F:57 , THR F:58 , HOH F:889 , HOH F:1930
BINDING SITE FOR RESIDUE SO4 F 341
22
CC4
SOFTWARE
LYS F:207 , ALA F:240 , THR F:260 , ASP F:261 , THR F:262 , ASN F:280 , TYR F:283 , TRP F:294 , HOH F:536
BINDING SITE FOR RESIDUE GOL F 342
23
CC5
SOFTWARE
GLY B:57 , THR B:58 , ARG G:249
BINDING SITE FOR RESIDUE SO4 G 340
24
CC6
SOFTWARE
ARG B:249 , GLY G:57 , THR G:58 , HOH G:385 , HOH G:1790
BINDING SITE FOR RESIDUE SO4 G 341
25
CC7
SOFTWARE
LYS G:207 , GLY G:264 , HOH G:386
BINDING SITE FOR RESIDUE SO4 G 342
26
CC8
SOFTWARE
GLY G:184 , LYS G:329 , HOH G:1010 , HOH G:1421
BINDING SITE FOR RESIDUE SO4 G 343
27
CC9
SOFTWARE
GLY G:79 , TYR G:227 , SER G:299 , HOH G:1319 , HOH G:1382
BINDING SITE FOR RESIDUE SO4 G 344
28
DC1
SOFTWARE
LYS G:207 , ALA G:240 , ASP G:261 , THR G:262 , ASN G:280 , TYR G:283 , TRP G:294 , HOH G:357
BINDING SITE FOR RESIDUE GOL G 345
29
DC2
SOFTWARE
THR G:123 , ASN G:139 , TYR G:140 , ASP G:141 , HOH G:368
BINDING SITE FOR RESIDUE GOL G 346
30
DC3
SOFTWARE
GLY H:184 , LYS H:329
BINDING SITE FOR RESIDUE SO4 H 340
31
DC4
SOFTWARE
GLY H:57 , THR H:58 , HOH H:813 , HOH H:2133
BINDING SITE FOR RESIDUE SO4 H 341
32
DC5
SOFTWARE
LYS H:207 , GLY H:264 , THR H:265 , HOH H:899 , HOH H:1179
BINDING SITE FOR RESIDUE GOL H 342
33
DC6
SOFTWARE
LYS H:207 , ALA H:240 , ILE H:256 , ASP H:261 , ASN H:280 , TYR H:283 , TRP H:294 , HOH H:387
BINDING SITE FOR RESIDUE GOL H 343
34
DC7
SOFTWARE
LEU H:5 , LYS H:17 , VAL H:18 , SER H:19 , THR H:94 , ASN H:96 , GLY H:97
BINDING SITE FOR RESIDUE GOL H 344
35
DC8
SOFTWARE
GLY H:79 , SER H:299 , ASP H:301 , HOH H:812 , HOH H:932 , STA P:506
BINDING SITE FOR RESIDUE GOL H 345
36
DC9
SOFTWARE
THR H:123 , ASN H:139 , TYR H:140 , ASP H:141 , HOH H:384
BINDING SITE FOR RESIDUE GOL H 346
37
EC1
SOFTWARE
SER A:183 , GLY A:184 , LYS A:329
BINDING SITE FOR RESIDUE SO4 A 340
38
EC2
SOFTWARE
GLY A:79 , SER A:299 , ASP A:301 , HOH A:1378 , STA I:506
BINDING SITE FOR RESIDUE GOL A 341
39
EC3
SOFTWARE
LYS A:17 , SER A:19 , THR A:94 , ASN A:96 , GLY A:97
BINDING SITE FOR RESIDUE GOL A 342
40
EC4
SOFTWARE
LYS A:207 , GLY A:208 , GLY A:264 , THR A:265
BINDING SITE FOR RESIDUE GOL A 343
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
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PROSITE Patterns/Profiles
(2, 24)
Info
All PROSITE Patterns/Profiles
1: PEPTIDASE_A1 (A:14-326,B:14-326,C:14-326,D:14-32...)
2: ASP_PROTEASE (A:29-40,B:29-40,C:29-40,D:29-40,E:...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PEPTIDASE_A1
PS51767
Peptidase family A1 domain profile.
CARP1_CANPA
76-389
8
A:14-326
B:14-326
C:14-326
D:14-326
E:14-326
F:14-326
G:14-326
H:14-326
2
ASP_PROTEASE
PS00141
Eukaryotic and viral aspartyl proteases active site.
CARP1_CANPA
91-102
279-290
16
A:29-40
B:29-40
C:29-40
D:29-40
E:29-40
F:29-40
G:29-40
H:29-40
A:217-228
B:217-228
C:217-228
D:217-228
E:217-228
F:217-228
G:217-228
H:217-228
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d3fv3a_ (A:)
1b: SCOP_d3fv3b_ (B:)
1c: SCOP_d3fv3c_ (C:)
1d: SCOP_d3fv3d_ (D:)
1e: SCOP_d3fv3e_ (E:)
1f: SCOP_d3fv3f_ (F:)
1g: SCOP_d3fv3g_ (G:)
1h: SCOP_d3fv3h_ (H:)
View:
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Acid proteases
(1120)
Superfamily
:
Acid proteases
(1120)
Family
:
automated matches
(23)
Protein domain
:
automated matches
(23)
Candida parapsilosis [TaxId: 5480]
(2)
1a
d3fv3a_
A:
1b
d3fv3b_
B:
1c
d3fv3c_
C:
1d
d3fv3d_
D:
1e
d3fv3e_
E:
1f
d3fv3f_
F:
1g
d3fv3g_
G:
1h
d3fv3h_
H:
[
close SCOP info
]
CATH Domains
(1, 16)
Info
all CATH domains
1a: CATH_3fv3A02 (A:176-339)
1b: CATH_3fv3B02 (B:176-339)
1c: CATH_3fv3B01 (B:1-175)
1d: CATH_3fv3C01 (C:1-175)
1e: CATH_3fv3E01 (E:1-175)
1f: CATH_3fv3F01 (F:1-175)
1g: CATH_3fv3G01 (G:1-175)
1h: CATH_3fv3H01 (H:1-175)
1i: CATH_3fv3C02 (C:176-339)
1j: CATH_3fv3D02 (D:176-339)
1k: CATH_3fv3E02 (E:176-339)
1l: CATH_3fv3F02 (F:176-339)
1m: CATH_3fv3G02 (G:176-339)
1n: CATH_3fv3H02 (H:176-339)
1o: CATH_3fv3D01 (D:1-175)
1p: CATH_3fv3A01 (A:1-175)
View:
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(
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Architectures
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Cathepsin D, subunit A; domain 1
(745)
Homologous Superfamily
:
Acid Proteases
(745)
Candida parapsilosis. Organism_taxid: 5480. Strain: p-69.
(1)
1a
3fv3A02
A:176-339
1b
3fv3B02
B:176-339
1c
3fv3B01
B:1-175
1d
3fv3C01
C:1-175
1e
3fv3E01
E:1-175
1f
3fv3F01
F:1-175
1g
3fv3G01
G:1-175
1h
3fv3H01
H:1-175
1i
3fv3C02
C:176-339
1j
3fv3D02
D:176-339
1k
3fv3E02
E:176-339
1l
3fv3F02
F:176-339
1m
3fv3G02
G:176-339
1n
3fv3H02
H:176-339
1o
3fv3D01
D:1-175
1p
3fv3A01
A:1-175
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
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