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3FU9
Asym. Unit
Info
Asym.Unit (205 KB)
Biol.Unit 1 (194 KB)
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(1)
Title
:
MELANOCARPUS ALBOMYCES LACCASE CRYSTAL SOAKED (20 MIN) WITH 2,6-DIMETHOXYPHENOL
Authors
:
J. P. Kallio, N. Hakulinen, J. Rouvinen
Date
:
14 Jan 09 (Deposition) - 22 Sep 09 (Release) - 14 Jan 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Laccase, Multicopper Oxidase, Complex Structure, 2, 6-Dimethoxyphenol, Oxidation Of Phenolic Compounds, Glycoprotein, Lignin Degradation, Metal-Binding, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. P. Kallio, S. Auer, J. Janis, M. Andberg, K. Kruus, J. Rouvinen, A. Koivula, N. Hakulinen
Structure-Function Studies Of A Melanocarpus Albomyces Laccase Suggest A Pathway For Oxidation Of Phenolic Compounds.
J. Mol. Biol. V. 392 895 2009
[
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Hetero Components
(5, 29)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: COPPER (II) ION (CUa)
2b: COPPER (II) ION (CUb)
2c: COPPER (II) ION (CUc)
2d: COPPER (II) ION (CUd)
2e: COPPER (II) ION (CUe)
2f: COPPER (II) ION (CUf)
2g: COPPER (II) ION (CUg)
2h: COPPER (II) ION (CUh)
3a: 2,6-DIMETHOXYBENZENE-1,4-DIOL (KIBa)
3b: 2,6-DIMETHOXYBENZENE-1,4-DIOL (KIBb)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
4o: N-ACETYL-D-GLUCOSAMINE (NAGo)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
2
CU
8
Ligand/Ion
COPPER (II) ION
3
KIB
2
Ligand/Ion
2,6-DIMETHOXYBENZENE-1,4-DIOL
4
NAG
15
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
SO4
2
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(29, 29)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:431 , CYS A:503 , HIS A:508
BINDING SITE FOR RESIDUE CU A 601
02
AC2
SOFTWARE
HIS A:140 , HIS A:436 , HIS A:502 , HOH A:568
BINDING SITE FOR RESIDUE CU A 602
03
AC3
SOFTWARE
HIS A:95 , HIS A:138 , HIS A:504 , HOH A:568
BINDING SITE FOR RESIDUE CU A 603
04
AC4
SOFTWARE
HIS A:93 , HIS A:434 , HIS A:436 , CL A:610
BINDING SITE FOR RESIDUE CU A 604
05
AC5
SOFTWARE
GLY A:96 , HIS A:434 , LEU A:435 , HIS A:436 , HOH A:563 , CU A:604 , HOH A:715
BINDING SITE FOR RESIDUE CL A 610
06
AC6
SOFTWARE
ASN A:39 , ASN A:84 , HOH A:780 , GLU B:78 , ARG B:126
BINDING SITE FOR RESIDUE NAG A 700
07
AC7
SOFTWARE
LYS A:56 , MET A:58 , THR A:87 , ASN A:88 , ASP A:181 , ASN A:550 , TYR A:552 , PRO A:553 , NAG A:711 , HOH A:750 , HOH A:786
BINDING SITE FOR RESIDUE NAG A 710
08
AC8
SOFTWARE
GLU A:55 , ASP A:182 , TYR A:552 , NAG A:710 , HOH A:721
BINDING SITE FOR RESIDUE NAG A 711
09
AC9
SOFTWARE
ASN A:216 , THR A:218 , ILE A:309 , HIS A:311 , HOH A:716 , HOH A:752 , HOH A:871
BINDING SITE FOR RESIDUE NAG A 720
10
BC1
SOFTWARE
TRP A:287 , ASN A:289 , HIS A:305 , ALA A:307 , GLU A:323 , NAG A:731 , HOH A:737
BINDING SITE FOR RESIDUE NAG A 730
11
BC2
SOFTWARE
TRP A:287 , HIS A:305 , GLU A:323 , NAG A:730 , HOH A:816 , HOH A:874
BINDING SITE FOR RESIDUE NAG A 731
12
BC3
SOFTWARE
PRO A:355 , THR A:358 , LEU A:359 , ASN A:376 , VAL A:406 , HOH A:732
BINDING SITE FOR RESIDUE NAG A 740
13
BC4
SOFTWARE
ARG A:128 , ARG A:130 , HOH A:609 , ARG B:492
BINDING SITE FOR RESIDUE SO4 A 8002
14
BC5
SOFTWARE
PRO A:192 , ALA A:297 , PHE A:371 , LEU A:429 , HIS A:508
BINDING SITE FOR RESIDUE KIB A 1001
15
BC6
SOFTWARE
HIS B:431 , CYS B:503 , HIS B:508
BINDING SITE FOR RESIDUE CU B 601
16
BC7
SOFTWARE
HIS B:140 , HIS B:436 , HIS B:502 , HOH B:617
BINDING SITE FOR RESIDUE CU B 602
17
BC8
SOFTWARE
HIS B:95 , TRP B:136 , HIS B:138 , HIS B:504 , HOH B:617
BINDING SITE FOR RESIDUE CU B 603
18
BC9
SOFTWARE
HIS B:93 , HIS B:95 , HIS B:434 , HIS B:436 , CL B:610
BINDING SITE FOR RESIDUE CU B 604
19
CC1
SOFTWARE
HIS B:93 , GLY B:96 , HIS B:434 , CU B:604 , HOH B:844
BINDING SITE FOR RESIDUE CL B 610
20
CC2
SOFTWARE
GLU A:78 , ARG A:126 , ASN B:39 , HOH B:696 , HOH B:845
BINDING SITE FOR RESIDUE NAG B 700
21
CC3
SOFTWARE
GLU B:42 , LYS B:56 , THR B:87 , ASN B:88 , ASP B:181 , ASN B:550 , TYR B:552 , HOH B:560 , HOH B:678 , NAG B:711 , HOH B:742 , HOH B:937
BINDING SITE FOR RESIDUE NAG B 710
22
CC4
SOFTWARE
GLU B:55 , ALA B:179 , ASP B:181 , ASP B:182 , TYR B:552 , HOH B:608 , NAG B:710 , HOH B:734 , HOH B:899 , HOH B:924
BINDING SITE FOR RESIDUE NAG B 711
23
CC5
SOFTWARE
ASN B:216 , THR B:218 , HIS B:311 , GLY B:317 , HOH B:572 , HOH B:614
BINDING SITE FOR RESIDUE NAG B 720
24
CC6
SOFTWARE
VAL B:243 , TRP B:287 , ASN B:289 , HIS B:305 , ALA B:307 , GLU B:323 , NAG B:731 , HOH B:762
BINDING SITE FOR RESIDUE NAG B 730
25
CC7
SOFTWARE
TRP B:287 , HIS B:305 , GLU B:323 , NAG B:730 , HOH B:853
BINDING SITE FOR RESIDUE NAG B 731
26
CC8
SOFTWARE
PRO B:355 , ASP B:356 , THR B:358 , ASN B:376 , HOH B:622 , HOH B:745 , HOH B:893
BINDING SITE FOR RESIDUE NAG B 740
27
CC9
SOFTWARE
PHE B:170 , ASN B:201 , VAL B:217 , HOH B:744 , HOH B:786 , HOH B:827 , HOH B:861
BINDING SITE FOR RESIDUE NAG B 760
28
DC1
SOFTWARE
ARG A:492 , ARG B:128 , ARG B:130
BINDING SITE FOR RESIDUE SO4 B 8001
29
DC2
SOFTWARE
ALA B:191 , PRO B:192 , ALA B:296 , ALA B:297 , LEU B:429 , HIS B:508 , HOH B:566 , HOH B:607 , HOH B:797 , HOH B:819
BINDING SITE FOR RESIDUE KIB B 2001
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: MULTICOPPER_OXIDASE1 (A:497-517,B:497-517)
2: MULTICOPPER_OXIDASE2 (A:502-513,B:502-513)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MULTICOPPER_OXIDASE1
PS00079
Multicopper oxidases signature 1.
LAC1_MELAO
547-567
2
A:497-517
B:497-517
2
MULTICOPPER_OXIDASE2
PS00080
Multicopper oxidases signature 2.
LAC1_MELAO
552-563
2
A:502-513
B:502-513
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d3fu9a1 (A:1-162)
1b: SCOP_d3fu9a2 (A:163-343)
1c: SCOP_d3fu9a3 (A:344-559)
1d: SCOP_d3fu9b1 (B:1-162)
1e: SCOP_d3fu9b2 (B:163-343)
1f: SCOP_d3fu9b3 (B:344-559)
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Classes
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(
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(
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(
)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
Multidomain cupredoxins
(146)
Protein domain
:
Laccase
(13)
Fungus (Melanocarpus albomyces) [TaxId: 204285]
(8)
1a
d3fu9a1
A:1-162
1b
d3fu9a2
A:163-343
1c
d3fu9a3
A:344-559
1d
d3fu9b1
B:1-162
1e
d3fu9b2
B:163-343
1f
d3fu9b3
B:344-559
[
close SCOP info
]
CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_3fu9A01 (A:1-158)
1b: CATH_3fu9A02 (A:159-342)
1c: CATH_3fu9B02 (B:159-342)
1d: CATH_3fu9A03 (A:343-559)
1e: CATH_3fu9B03 (B:343-559)
1f: CATH_3fu9B01 (B:1-158)
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Topologies
(
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Cupredoxins - blue copper proteins
(420)
Melanocarpus albomyces. Organism_taxid: 204285. Strain: vtt d-96490.
(7)
1a
3fu9A01
A:1-158
1b
3fu9A02
A:159-342
1c
3fu9B02
B:159-342
1d
3fu9A03
A:343-559
1e
3fu9B03
B:343-559
1f
3fu9B01
B:1-158
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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