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3FU8
Asym. Unit
Info
Asym.Unit (222 KB)
Biol.Unit 1 (212 KB)
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(1)
Title
:
MELANOCARPUS ALBOMYCES LACCASE CRYSTAL SOAKED (10 SEC) WITH 2,6-DIMETHOXYPHENOL
Authors
:
J. P. Kallio, N. Hakulinen, J. Rouvinen
Date
:
14 Jan 09 (Deposition) - 22 Sep 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Laccase, Multicopper Oxidase, Complex Structure, 2, 6-Dimethoxyphenol, Oxidation Of Phenolic Compounds, Glycoprotein, Lignin Degradation, Metal-Binding, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. P. Kallio, S. Auer, J. Janis, M. Andberg, K. Kruus, J. Rouvinen, A. Koivula, N. Hakulinen
Structure-Function Studies Of A Melanocarpus Albomyces Laccase Suggest A Pathway For Oxidation Of Phenolic Compounds.
J. Mol. Biol. V. 392 895 2009
[
close entry info
]
Hetero Components
(8, 48)
Info
All Hetero Components
1a: 2,6-DIMETHOXYPHENOL (3DMa)
1b: 2,6-DIMETHOXYPHENOL (3DMb)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
3a: COPPER (II) ION (CUa)
3b: COPPER (II) ION (CUb)
3c: COPPER (II) ION (CUc)
3d: COPPER (II) ION (CUd)
3e: COPPER (II) ION (CUe)
3f: COPPER (II) ION (CUf)
3g: COPPER (II) ION (CUg)
3h: COPPER (II) ION (CUh)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
5a: ALPHA-D-MANNOSE (MANa)
5b: ALPHA-D-MANNOSE (MANb)
5c: ALPHA-D-MANNOSE (MANc)
5d: ALPHA-D-MANNOSE (MANd)
5e: ALPHA-D-MANNOSE (MANe)
5f: ALPHA-D-MANNOSE (MANf)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6e: N-ACETYL-D-GLUCOSAMINE (NAGe)
6f: N-ACETYL-D-GLUCOSAMINE (NAGf)
6g: N-ACETYL-D-GLUCOSAMINE (NAGg)
6h: N-ACETYL-D-GLUCOSAMINE (NAGh)
6i: N-ACETYL-D-GLUCOSAMINE (NAGi)
6j: N-ACETYL-D-GLUCOSAMINE (NAGj)
6k: N-ACETYL-D-GLUCOSAMINE (NAGk)
6l: N-ACETYL-D-GLUCOSAMINE (NAGl)
6m: N-ACETYL-D-GLUCOSAMINE (NAGm)
6n: N-ACETYL-D-GLUCOSAMINE (NAGn)
6o: N-ACETYL-D-GLUCOSAMINE (NAGo)
6p: N-ACETYL-D-GLUCOSAMINE (NAGp)
6q: N-ACETYL-D-GLUCOSAMINE (NAGq)
6r: N-ACETYL-D-GLUCOSAMINE (NAGr)
6s: N-ACETYL-D-GLUCOSAMINE (NAGs)
6t: N-ACETYL-D-GLUCOSAMINE (NAGt)
6u: N-ACETYL-D-GLUCOSAMINE (NAGu)
6v: N-ACETYL-D-GLUCOSAMINE (NAGv)
6w: N-ACETYL-D-GLUCOSAMINE (NAGw)
7a: 3-(2-OXO-2H-IMIDAZOL-4-YL)-L-ALANI... (OHIa)
7b: 3-(2-OXO-2H-IMIDAZOL-4-YL)-L-ALANI... (OHIb)
8a: SULFATE ION (SO4a)
8b: SULFATE ION (SO4b)
8c: SULFATE ION (SO4c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
3DM
2
Ligand/Ion
2,6-DIMETHOXYPHENOL
2
CL
2
Ligand/Ion
CHLORIDE ION
3
CU
8
Ligand/Ion
COPPER (II) ION
4
GOL
2
Ligand/Ion
GLYCEROL
5
MAN
6
Ligand/Ion
ALPHA-D-MANNOSE
6
NAG
23
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
7
OHI
2
Mod. Amino Acid
3-(2-OXO-2H-IMIDAZOL-4-YL)-L-ALANINE
8
SO4
3
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(46, 46)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:431 , CYS A:503 , HIS A:508 , LEU A:513
BINDING SITE FOR RESIDUE CU A 601
02
AC2
SOFTWARE
HIS A:140 , HIS A:436 , HIS A:502 , HOH A:1176
BINDING SITE FOR RESIDUE CU A 602
03
AC3
SOFTWARE
HIS A:95 , TRP A:136 , HIS A:138 , HIS A:504 , HOH A:1176
BINDING SITE FOR RESIDUE CU A 603
04
AC4
SOFTWARE
HIS A:93 , HIS A:434 , HIS A:436 , CL A:610
BINDING SITE FOR RESIDUE CU A 604
05
AC5
SOFTWARE
HIS A:93 , GLY A:96 , HIS A:434 , CU A:604 , HOH A:672 , HOH A:794
BINDING SITE FOR RESIDUE CL A 610
06
AC6
SOFTWARE
ASN A:39 , ASN A:84 , HOH A:1028 , GLU B:78 , ARG B:126
BINDING SITE FOR RESIDUE NAG A 700
07
AC7
SOFTWARE
LYS A:56 , MET A:58 , THR A:87 , ASN A:88 , ASP A:181 , ASN A:550 , TYR A:552 , HOH A:581 , HOH A:608 , NAG A:711 , HOH A:836 , HOH A:865 , HOH A:1195
BINDING SITE FOR RESIDUE NAG A 710
08
AC8
SOFTWARE
GLU A:55 , ALA A:179 , ASP A:181 , ASP A:182 , TYR A:552 , HOH A:692 , NAG A:710 , MAN A:712 , HOH A:736 , HOH A:1069
BINDING SITE FOR RESIDUE NAG A 711
09
AC9
SOFTWARE
NAG A:711 , MAN A:714 , HOH A:1005 , HOH A:1098 , HOH A:1181 , HOH A:1232
BINDING SITE FOR RESIDUE MAN A 712
10
BC1
SOFTWARE
GLU A:55 , ARG A:178 , MAN A:712 , HOH A:814 , HOH A:1063 , HOH A:1069 , HOH A:1167
BINDING SITE FOR RESIDUE MAN A 714
11
BC2
SOFTWARE
ASN A:216 , THR A:218 , ILE A:309 , HIS A:311 , GLY A:317 , GLY A:318 , HOH A:598 , NAG A:721 , HOH A:981
BINDING SITE FOR RESIDUE NAG A 720
12
BC3
SOFTWARE
HIS A:311 , ALA A:313 , GLY A:314 , HOH A:560 , NAG A:720 , HOH A:1186
BINDING SITE FOR RESIDUE NAG A 721
13
BC4
SOFTWARE
TRP A:287 , ASN A:289 , THR A:291 , HIS A:305 , ALA A:307 , GLU A:323 , THR A:325 , NAG A:731 , HOH A:950 , HOH A:1083 , HOH A:1286
BINDING SITE FOR RESIDUE NAG A 730
14
BC5
SOFTWARE
HIS A:305 , GLU A:323 , NAG A:730 , MAN A:732 , HOH A:950 , HOH A:1142 , HOH A:1335
BINDING SITE FOR RESIDUE NAG A 731
15
BC6
SOFTWARE
NAG A:731 , HOH A:748 , HOH A:767 , HOH A:990
BINDING SITE FOR RESIDUE MAN A 732
16
BC7
SOFTWARE
PRO A:355 , ASP A:356 , THR A:358 , LEU A:359 , ASN A:376 , VAL A:406 , HOH A:689 , NAG A:741 , HOH A:1301
BINDING SITE FOR RESIDUE NAG A 740
17
BC8
SOFTWARE
PRO A:355 , NAG A:740 , HOH A:847 , HOH A:1231
BINDING SITE FOR RESIDUE NAG A 741
18
BC9
SOFTWARE
LYS A:386 , TYR A:391 , ASN A:396 , HOH A:1127 , GLN B:530
BINDING SITE FOR RESIDUE NAG A 750
19
CC1
SOFTWARE
ASN A:201 , VAL A:217 , NAG A:761 , HOH A:769 , HOH A:854 , HOH A:1152 , HOH A:1303
BINDING SITE FOR RESIDUE NAG A 760
20
CC2
SOFTWARE
NAG A:760 , HOH A:1303
BINDING SITE FOR RESIDUE NAG A 761
21
CC3
SOFTWARE
ARG A:128 , ARG A:130 , HOH A:1096 , ARG B:492
BINDING SITE FOR RESIDUE SO4 A 3800
22
CC4
SOFTWARE
ARG A:520 , ARG A:527 , HOH A:739 , ARG B:520 , ARG B:527
BINDING SITE FOR RESIDUE SO4 A 3801
23
CC5
SOFTWARE
PRO A:192 , ALA A:296 , ALA A:297 , PHE A:371 , TRP A:373 , LEU A:429 , HIS A:508 , HOH A:568 , HOH A:1166 , GOL A:3902
BINDING SITE FOR RESIDUE 3DM A 2900
24
CC6
SOFTWARE
PHE A:427 , 3DM A:2900 , PHE B:427 , 3DM B:2910
BINDING SITE FOR RESIDUE GOL A 3902
25
CC7
SOFTWARE
HIS B:431 , CYS B:503 , ILE B:505 , HIS B:508
BINDING SITE FOR RESIDUE CU B 601
26
CC8
SOFTWARE
HIS B:140 , HIS B:436 , HIS B:502 , HOH B:717
BINDING SITE FOR RESIDUE CU B 602
27
CC9
SOFTWARE
HIS B:95 , TRP B:136 , HIS B:138 , HIS B:504 , HOH B:717
BINDING SITE FOR RESIDUE CU B 603
28
DC1
SOFTWARE
HIS B:93 , HIS B:434 , HIS B:436 , CL B:610
BINDING SITE FOR RESIDUE CU B 604
29
DC2
SOFTWARE
HIS B:93 , GLY B:96 , HIS B:434 , CU B:604 , HOH B:738 , HOH B:1048
BINDING SITE FOR RESIDUE CL B 610
30
DC3
SOFTWARE
GLU A:78 , ARG A:126 , ASN B:39 , ASN B:84 , HOH B:897 , HOH B:1184
BINDING SITE FOR RESIDUE NAG B 700
31
DC4
SOFTWARE
THR B:87 , ASN B:88 , ASP B:181 , ASN B:550 , TYR B:552 , PRO B:553 , HOH B:567 , HOH B:688 , NAG B:711 , HOH B:832 , HOH B:890 , HOH B:1110
BINDING SITE FOR RESIDUE NAG B 710
32
DC5
SOFTWARE
GLU B:55 , ALA B:179 , ASP B:181 , ASP B:182 , HOH B:611 , NAG B:710 , MAN B:712 , HOH B:870 , HOH B:900 , HOH B:1325
BINDING SITE FOR RESIDUE NAG B 711
33
DC6
SOFTWARE
NAG B:711 , MAN B:714 , HOH B:1012
BINDING SITE FOR RESIDUE MAN B 712
34
DC7
SOFTWARE
GLU B:55 , ARG B:178 , ASP B:182 , MAN B:712 , HOH B:770 , HOH B:1230
BINDING SITE FOR RESIDUE MAN B 714
35
DC8
SOFTWARE
ASN B:216 , THR B:218 , HIS B:311 , NAG B:721 , HOH B:794 , HOH B:810 , HOH B:1030
BINDING SITE FOR RESIDUE NAG B 720
36
DC9
SOFTWARE
HIS B:311 , GLY B:314 , HOH B:615 , NAG B:720 , HOH B:1035 , HOH B:1064
BINDING SITE FOR RESIDUE NAG B 721
37
EC1
SOFTWARE
TRP B:287 , ASN B:289 , THR B:291 , HIS B:305 , ALA B:307 , GLU B:323 , THR B:325 , HOH B:723 , NAG B:731 , HOH B:968
BINDING SITE FOR RESIDUE NAG B 730
38
EC2
SOFTWARE
TYR B:214 , HIS B:305 , GLU B:323 , NAG B:730 , MAN B:732 , HOH B:1278 , HOH B:1305
BINDING SITE FOR RESIDUE NAG B 731
39
EC3
SOFTWARE
NAG B:731 , HOH B:838
BINDING SITE FOR RESIDUE MAN B 732
40
EC4
SOFTWARE
PRO B:355 , ASP B:356 , THR B:358 , LEU B:359 , ASN B:376 , VAL B:406 , NAG B:741 , HOH B:868 , HOH B:936
BINDING SITE FOR RESIDUE NAG B 740
41
EC5
SOFTWARE
ASP B:356 , HOH B:598 , NAG B:740 , HOH B:1003 , HOH B:1087 , HOH B:1189 , HOH B:1297
BINDING SITE FOR RESIDUE NAG B 741
42
EC6
SOFTWARE
ASP A:379 , ASN A:381 , LYS B:386 , ASN B:396 , HOH B:945 , HOH B:951 , HOH B:977 , HOH B:1044 , HOH B:1135 , HOH B:1333
BINDING SITE FOR RESIDUE NAG B 1750
43
EC7
SOFTWARE
LEU B:167 , ASN B:201 , VAL B:217 , HOH B:600 , HOH B:697 , HOH B:875 , HOH B:1004 , HOH B:1116
BINDING SITE FOR RESIDUE NAG B 2760
44
EC8
SOFTWARE
ARG A:492 , ARG B:128 , ARG B:130
BINDING SITE FOR RESIDUE SO4 B 4802
45
EC9
SOFTWARE
GOL A:3902 , PRO B:192 , ALA B:296 , ALA B:297 , PHE B:371 , LEU B:429 , HIS B:508 , HOH B:638 , HOH B:805 , HOH B:815 , GOL B:3901
BINDING SITE FOR RESIDUE 3DM B 2910
46
FC1
SOFTWARE
PHE A:427 , PHE B:427 , HOH B:1354 , 3DM B:2910
BINDING SITE FOR RESIDUE GOL B 3901
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: MULTICOPPER_OXIDASE1 (A:497-517,B:497-517)
2: MULTICOPPER_OXIDASE2 (A:502-513,B:502-513)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MULTICOPPER_OXIDASE1
PS00079
Multicopper oxidases signature 1.
LAC1_MELAO
547-567
2
A:497-517
B:497-517
2
MULTICOPPER_OXIDASE2
PS00080
Multicopper oxidases signature 2.
LAC1_MELAO
552-563
2
A:502-513
B:502-513
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d3fu8a1 (A:1-162)
1b: SCOP_d3fu8a2 (A:163-343)
1c: SCOP_d3fu8a3 (A:344-559)
1d: SCOP_d3fu8b1 (B:1-162)
1e: SCOP_d3fu8b2 (B:163-343)
1f: SCOP_d3fu8b3 (B:344-559)
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Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
Multidomain cupredoxins
(146)
Protein domain
:
Laccase
(13)
Fungus (Melanocarpus albomyces) [TaxId: 204285]
(8)
1a
d3fu8a1
A:1-162
1b
d3fu8a2
A:163-343
1c
d3fu8a3
A:344-559
1d
d3fu8b1
B:1-162
1e
d3fu8b2
B:163-343
1f
d3fu8b3
B:344-559
[
close SCOP info
]
CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_3fu8A01 (A:1-158)
1b: CATH_3fu8B01 (B:1-158)
1c: CATH_3fu8A02 (A:159-342)
1d: CATH_3fu8B02 (B:159-342)
1e: CATH_3fu8A03 (A:343-559)
1f: CATH_3fu8B03 (B:343-559)
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Organisms
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(
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Cupredoxins - blue copper proteins
(420)
Melanocarpus albomyces. Organism_taxid: 204285. Strain: vtt d-96490.
(7)
1a
3fu8A01
A:1-158
1b
3fu8B01
B:1-158
1c
3fu8A02
A:159-342
1d
3fu8B02
B:159-342
1e
3fu8A03
A:343-559
1f
3fu8B03
B:343-559
[
close CATH info
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Pfam Domains
(0, 0)
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all PFAM domains
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