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3FU7
Asym. Unit
Info
Asym.Unit (218 KB)
Biol.Unit 1 (208 KB)
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(1)
Title
:
MELANOCARPUS ALBOMYCES LACCASE CRYSTAL SOAKED (4 SEC) WITH 2,6-DIMETHOXYPHENOL
Authors
:
J. P. Kallio, N. Hakulinen, J. Rouvinen
Date
:
14 Jan 09 (Deposition) - 22 Sep 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.67
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Laccase, Multicopper Oxidase, Complex Structure, 2, 6-Dimethoxyphenol, Oxidation Of Phenolic Compounds, Glycoprotein, Lignin Degradation, Metal-Binding, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. P. Kallio, S. Auer, J. Janis, M. Andberg, K. Kruus, J. Rouvinen, A. Koivula, N. Hakulinen
Structure Function Studies Of A Melanocarpus Albomyces Laccase Suggest A Pathway For Oxidation Of Phenolic Compounds.
J. Mol. Biol. V. 392 895 2009
[
close entry info
]
Hetero Components
(10, 48)
Info
All Hetero Components
01a: 2,6-DIMETHOXYPHENOL (3DMa)
02a: CHLORIDE ION (CLa)
02b: CHLORIDE ION (CLb)
03a: COPPER (II) ION (CUa)
03b: COPPER (II) ION (CUb)
03c: COPPER (II) ION (CUc)
03d: COPPER (II) ION (CUd)
03e: COPPER (II) ION (CUe)
03f: COPPER (II) ION (CUf)
03g: COPPER (II) ION (CUg)
03h: COPPER (II) ION (CUh)
04a: 4-(2,6-DIMETHOXYPHENOXY)-2,6-DIMET... (D2Ma)
05a: 2,6-DIMETHOXYCYCLOHEXA-2,5-DIENE-1... (KIAa)
06a: ALPHA-D-MANNOSE (MANa)
06b: ALPHA-D-MANNOSE (MANb)
06c: ALPHA-D-MANNOSE (MANc)
06d: ALPHA-D-MANNOSE (MANd)
06e: ALPHA-D-MANNOSE (MANe)
06f: ALPHA-D-MANNOSE (MANf)
07a: N-ACETYL-D-GLUCOSAMINE (NAGa)
07b: N-ACETYL-D-GLUCOSAMINE (NAGb)
07c: N-ACETYL-D-GLUCOSAMINE (NAGc)
07d: N-ACETYL-D-GLUCOSAMINE (NAGd)
07e: N-ACETYL-D-GLUCOSAMINE (NAGe)
07f: N-ACETYL-D-GLUCOSAMINE (NAGf)
07g: N-ACETYL-D-GLUCOSAMINE (NAGg)
07h: N-ACETYL-D-GLUCOSAMINE (NAGh)
07i: N-ACETYL-D-GLUCOSAMINE (NAGi)
07j: N-ACETYL-D-GLUCOSAMINE (NAGj)
07k: N-ACETYL-D-GLUCOSAMINE (NAGk)
07l: N-ACETYL-D-GLUCOSAMINE (NAGl)
07m: N-ACETYL-D-GLUCOSAMINE (NAGm)
07n: N-ACETYL-D-GLUCOSAMINE (NAGn)
07o: N-ACETYL-D-GLUCOSAMINE (NAGo)
07p: N-ACETYL-D-GLUCOSAMINE (NAGp)
07q: N-ACETYL-D-GLUCOSAMINE (NAGq)
07r: N-ACETYL-D-GLUCOSAMINE (NAGr)
07s: N-ACETYL-D-GLUCOSAMINE (NAGs)
07t: N-ACETYL-D-GLUCOSAMINE (NAGt)
07u: N-ACETYL-D-GLUCOSAMINE (NAGu)
07v: N-ACETYL-D-GLUCOSAMINE (NAGv)
07w: N-ACETYL-D-GLUCOSAMINE (NAGw)
08a: 3-(2-OXO-2H-IMIDAZOL-4-YL)-L-ALANI... (OHIa)
09a: OXYGEN MOLECULE (OXYa)
09b: OXYGEN MOLECULE (OXYb)
10a: SULFATE ION (SO4a)
10b: SULFATE ION (SO4b)
10c: SULFATE ION (SO4c)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
3DM
1
Ligand/Ion
2,6-DIMETHOXYPHENOL
2
CL
2
Ligand/Ion
CHLORIDE ION
3
CU
8
Ligand/Ion
COPPER (II) ION
4
D2M
1
Ligand/Ion
4-(2,6-DIMETHOXYPHENOXY)-2,6-DIMETHOXYPHENOL
5
KIA
1
Ligand/Ion
2,6-DIMETHOXYCYCLOHEXA-2,5-DIENE-1,4-DIONE
6
MAN
6
Ligand/Ion
ALPHA-D-MANNOSE
7
NAG
23
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
8
OHI
1
Mod. Amino Acid
3-(2-OXO-2H-IMIDAZOL-4-YL)-L-ALANINE
9
OXY
2
Ligand/Ion
OXYGEN MOLECULE
10
SO4
3
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(47, 47)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:431 , CYS A:503 , ILE A:505 , HIS A:508 , LEU A:513
BINDING SITE FOR RESIDUE CU A 601
02
AC2
SOFTWARE
HIS A:140 , HIS A:436 , HIS A:502 , OXY A:1620
BINDING SITE FOR RESIDUE CU A 602
03
AC3
SOFTWARE
HIS A:95 , TRP A:136 , HIS A:138 , HIS A:504 , OXY A:1620
BINDING SITE FOR RESIDUE CU A 603
04
AC4
SOFTWARE
HIS A:93 , HIS A:95 , HIS A:434 , HIS A:436 , CL A:610 , OXY A:1620
BINDING SITE FOR RESIDUE CU A 604
05
AC5
SOFTWARE
HIS A:93 , GLY A:96 , HIS A:434 , CU A:604 , HOH A:708 , HOH A:841
BINDING SITE FOR RESIDUE CL A 610
06
AC6
SOFTWARE
HIS A:93 , HIS A:95 , HIS A:138 , HIS A:140 , HIS A:434 , HIS A:436 , HIS A:502 , HIS A:504 , CU A:602 , CU A:603 , CU A:604
BINDING SITE FOR RESIDUE OXY A 1620
07
AC7
SOFTWARE
ASN A:39 , ILE A:82 , ASN A:84 , HOH A:586 , GLU B:78 , ARG B:126 , HOH B:953
BINDING SITE FOR RESIDUE NAG A 700
08
AC8
SOFTWARE
LYS A:56 , MET A:58 , THR A:87 , ASN A:88 , ASP A:181 , ASN A:550 , TYR A:552 , HOH A:651 , HOH A:665 , NAG A:711 , HOH A:783 , HOH A:972 , HOH A:1016
BINDING SITE FOR RESIDUE NAG A 710
09
AC9
SOFTWARE
GLU A:55 , ALA A:179 , ASP A:181 , ASP A:182 , HOH A:561 , HOH A:637 , NAG A:710 , MAN A:712 , HOH A:975
BINDING SITE FOR RESIDUE NAG A 711
10
BC1
SOFTWARE
NAG A:711 , MAN A:714
BINDING SITE FOR RESIDUE MAN A 712
11
BC2
SOFTWARE
GLU A:55 , ARG A:178 , MAN A:712 , HOH A:892 , HOH A:975
BINDING SITE FOR RESIDUE MAN A 714
12
BC3
SOFTWARE
ASN A:216 , THR A:218 , ILE A:309 , HIS A:311 , GLY A:317 , GLY A:318 , NAG A:721 , HOH A:727 , HOH A:1017
BINDING SITE FOR RESIDUE NAG A 720
13
BC4
SOFTWARE
HIS A:311 , ALA A:313 , GLY A:314 , NAG A:720 , HOH A:1084
BINDING SITE FOR RESIDUE NAG A 721
14
BC5
SOFTWARE
TRP A:287 , ASN A:289 , THR A:291 , HIS A:305 , ALA A:307 , GLU A:323 , THR A:325 , NAG A:731 , HOH A:924
BINDING SITE FOR RESIDUE NAG A 730
15
BC6
SOFTWARE
TYR A:214 , HIS A:305 , GLU A:323 , NAG A:730 , MAN A:732 , HOH A:1011 , HOH A:1034
BINDING SITE FOR RESIDUE NAG A 731
16
BC7
SOFTWARE
NAG A:731
BINDING SITE FOR RESIDUE MAN A 732
17
BC8
SOFTWARE
PRO A:355 , ASP A:356 , THR A:358 , LEU A:359 , ASN A:376 , VAL A:406 , NAG A:741 , HOH A:862
BINDING SITE FOR RESIDUE NAG A 740
18
BC9
SOFTWARE
ASP A:356 , NAG A:740 , HOH A:773
BINDING SITE FOR RESIDUE NAG A 741
19
CC1
SOFTWARE
LYS A:386 , TYR A:391 , ASN A:396 , GLN B:530 , GLU B:533
BINDING SITE FOR RESIDUE NAG A 750
20
CC2
SOFTWARE
LEU A:167 , ASN A:201 , VAL A:217 , NAG A:761 , HOH A:829 , HOH A:851 , HOH A:1009
BINDING SITE FOR RESIDUE NAG A 760
21
CC3
SOFTWARE
NAG A:760
BINDING SITE FOR RESIDUE NAG A 761
22
CC4
SOFTWARE
ARG A:128 , ARG A:130 , ARG B:492
BINDING SITE FOR RESIDUE SO4 A 3800
23
CC5
SOFTWARE
ARG A:520 , ARG A:527 , ARG B:520 , ARG B:527
BINDING SITE FOR RESIDUE SO4 A 3801
24
CC6
SOFTWARE
ALA A:191 , PRO A:192 , LEU A:363 , PHE A:371 , TRP A:373 , PHE A:427 , LEU A:429 , HIS A:508 , HOH A:723 , HOH A:1013 , KIA B:2910
BINDING SITE FOR RESIDUE 3DM A 3900
25
CC7
SOFTWARE
HIS B:431 , CYS B:503 , ILE B:505 , HIS B:508
BINDING SITE FOR RESIDUE CU B 601
26
CC8
SOFTWARE
HIS B:140 , HIS B:436 , HIS B:502 , OXY B:1620
BINDING SITE FOR RESIDUE CU B 602
27
CC9
SOFTWARE
HIS B:95 , TRP B:136 , HIS B:138 , HIS B:504 , OXY B:1620
BINDING SITE FOR RESIDUE CU B 603
28
DC1
SOFTWARE
HIS B:93 , HIS B:95 , HIS B:434 , HIS B:436 , CL B:610 , OXY B:1620
BINDING SITE FOR RESIDUE CU B 604
29
DC2
SOFTWARE
HIS B:93 , GLY B:96 , HIS B:434 , CU B:604 , HOH B:674 , HOH B:698
BINDING SITE FOR RESIDUE CL B 610
30
DC3
SOFTWARE
HIS B:93 , HIS B:138 , HIS B:140 , HIS B:434 , HIS B:436 , HIS B:502 , HIS B:504 , CU B:602 , CU B:603 , CU B:604
BINDING SITE FOR RESIDUE OXY B 1620
31
DC4
SOFTWARE
GLU A:78 , ARG A:126 , HOH A:785 , ASN B:39 , ASN B:84 , HOH B:651 , HOH B:763
BINDING SITE FOR RESIDUE NAG B 700
32
DC5
SOFTWARE
LYS B:56 , THR B:87 , ASN B:88 , ASP B:181 , ASN B:550 , TYR B:552 , PRO B:553 , HOH B:584 , HOH B:586 , HOH B:596 , HOH B:679 , NAG B:711 , HOH B:943
BINDING SITE FOR RESIDUE NAG B 710
33
DC6
SOFTWARE
GLU B:55 , ALA B:179 , ASP B:181 , ASP B:182 , TYR B:552 , HOH B:704 , NAG B:710 , MAN B:712 , HOH B:816 , HOH B:931
BINDING SITE FOR RESIDUE NAG B 711
34
DC7
SOFTWARE
NAG B:711 , MAN B:714
BINDING SITE FOR RESIDUE MAN B 712
35
DC8
SOFTWARE
GLU B:55 , ARG B:178 , MAN B:712 , HOH B:747 , HOH B:789 , HOH B:816
BINDING SITE FOR RESIDUE MAN B 714
36
DC9
SOFTWARE
ASN B:216 , THR B:218 , ILE B:309 , HIS B:311 , GLY B:317 , HOH B:625 , NAG B:721 , HOH B:762
BINDING SITE FOR RESIDUE NAG B 720
37
EC1
SOFTWARE
HIS B:311 , GLY B:314 , NAG B:720
BINDING SITE FOR RESIDUE NAG B 721
38
EC2
SOFTWARE
TRP B:287 , ASN B:289 , THR B:291 , HIS B:305 , ALA B:307 , GLU B:323 , THR B:325 , NAG B:731 , HOH B:758 , HOH B:945 , HOH B:966
BINDING SITE FOR RESIDUE NAG B 730
39
EC3
SOFTWARE
TYR B:214 , HIS B:305 , GLU B:323 , NAG B:730 , MAN B:732 , HOH B:945
BINDING SITE FOR RESIDUE NAG B 731
40
EC4
SOFTWARE
NAG B:731 , HOH B:902
BINDING SITE FOR RESIDUE MAN B 732
41
EC5
SOFTWARE
PRO B:355 , ASP B:356 , THR B:358 , LEU B:359 , ASN B:376 , VAL B:406 , NAG B:741 , HOH B:875
BINDING SITE FOR RESIDUE NAG B 740
42
EC6
SOFTWARE
ASP B:356 , NAG B:740 , HOH B:835
BINDING SITE FOR RESIDUE NAG B 741
43
EC7
SOFTWARE
ASP A:379 , ASN A:381 , HOH A:944 , LYS B:386 , ASN B:396
BINDING SITE FOR RESIDUE NAG B 1750
44
EC8
SOFTWARE
LEU B:167 , ASN B:201 , VAL B:217 , HOH B:577 , HOH B:715 , HOH B:790
BINDING SITE FOR RESIDUE NAG B 2760
45
EC9
SOFTWARE
ARG A:492 , ARG B:128 , ARG B:130
BINDING SITE FOR RESIDUE SO4 B 4802
46
FC1
SOFTWARE
ALA A:191 , PRO A:192 , PHE A:371 , PHE A:427 , LEU A:429 , PHE B:427 , HOH B:989
BINDING SITE FOR RESIDUE D2M B 2100
47
FC2
SOFTWARE
PHE A:427 , 3DM A:3900 , PHE B:427
BINDING SITE FOR RESIDUE KIA B 2910
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: MULTICOPPER_OXIDASE1 (A:497-517,B:497-517)
2: MULTICOPPER_OXIDASE2 (A:502-513,B:502-513)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MULTICOPPER_OXIDASE1
PS00079
Multicopper oxidases signature 1.
LAC1_MELAO
547-567
2
A:497-517
B:497-517
2
MULTICOPPER_OXIDASE2
PS00080
Multicopper oxidases signature 2.
LAC1_MELAO
552-563
2
A:502-513
B:502-513
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d3fu7a1 (A:1-162)
1b: SCOP_d3fu7b2 (B:163-343)
1c: SCOP_d3fu7b3 (B:344-559)
1d: SCOP_d3fu7a2 (A:163-343)
1e: SCOP_d3fu7a3 (A:344-559)
1f: SCOP_d3fu7b1 (B:1-162)
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Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
Multidomain cupredoxins
(146)
Protein domain
:
Laccase
(13)
Fungus (Melanocarpus albomyces) [TaxId: 204285]
(8)
1a
d3fu7a1
A:1-162
1b
d3fu7b2
B:163-343
1c
d3fu7b3
B:344-559
1d
d3fu7a2
A:163-343
1e
d3fu7a3
A:344-559
1f
d3fu7b1
B:1-162
[
close SCOP info
]
CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_3fu7A01 (A:1-158)
1b: CATH_3fu7A02 (A:159-342)
1c: CATH_3fu7B02 (B:159-342)
1d: CATH_3fu7B01 (B:1-158)
1e: CATH_3fu7A03 (A:343-559)
1f: CATH_3fu7B03 (B:343-559)
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Organisms
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Cupredoxins - blue copper proteins
(420)
Melanocarpus albomyces. Organism_taxid: 204285. Strain: vtt d-96490.
(7)
1a
3fu7A01
A:1-158
1b
3fu7A02
A:159-342
1c
3fu7B02
B:159-342
1d
3fu7B01
B:1-158
1e
3fu7A03
A:343-559
1f
3fu7B03
B:343-559
[
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]
Pfam Domains
(0, 0)
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all PFAM domains
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