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3FTG
Asym. Unit
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Asym.Unit (68 KB)
Biol.Unit 1 (64 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF H2DB IN COMPLEX WITH NP366-N3A VARIANT PEPTIDE FROM INFLUENZA
Authors
:
S. Gras, C. Guillonneau, J. Rossjohn
Date
:
12 Jan 09 (Deposition) - 29 Dec 09 (Release) - 29 Feb 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.60
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
H2Db, Mouse Mhc, Influenza, Immunology, Glycoprotein, Immune Response, Membrane, Mhc I, Transmembrane, Immunoglobulin Domain, Secreted, Immune System
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
S. A. Valkenburg, S. Gras, C. Guillonneau, N. L. La Gruta, P. G. Thomas A. W. Purcell, J. Rossjohn, P. C. Doherty, S. J. Turner, K. Kedzierska
Protective Efficacy Of Cross-Reactive Cd8+ T Cells Recognising Mutant Viral Epitopes Depends On Peptide-Mhc-I Structural Interactions And T Cell Activation Threshold.
Plos Pathog. V. 6 01039 2010
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Hetero Components
(0, 0)
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(5, 5)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_B2MG_MOUSE_002 (H34Q, chain B, )
2: VAR_B2MG_MOUSE_003 (K44E, chain B, )
3: VAR_B2MG_MOUSE_004 (R81T, chain B, )
4: VAR_B2MG_MOUSE_005 (D85D, chain B, )
5: VAR_B2MG_MOUSE_006 (D85V, chain B, )
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_B2MG_MOUSE_002
*
H
54
Q
B2MG_MOUSE
---
---
B
H
34
Q
2
UniProt
VAR_B2MG_MOUSE_003
*
K
64
E
B2MG_MOUSE
---
---
B
K
44
E
3
UniProt
VAR_B2MG_MOUSE_004
*
R
101
T
B2MG_MOUSE
---
---
B
R
81
T
4
UniProt
VAR_B2MG_MOUSE_005
*
A
105
D
B2MG_MOUSE
---
---
B
D
85
D
5
UniProt
VAR_B2MG_MOUSE_006
*
A
105
V
B2MG_MOUSE
---
---
B
D
85
V
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: IG_MHC (B:78-84,A:257-263)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IG_MHC
PS00290
Immunoglobulins and major histocompatibility complex proteins signature.
B2MG_MOUSE
98-104
1
B:78-84
HA11_MOUSE
281-287
1
A:257-263
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d3ftgb_ (B:)
2a: SCOP_d3ftga2 (A:182-275)
3a: SCOP_d3ftga1 (A:1-181)
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Protein Domains
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Organisms
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(
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Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
beta2-microglobulin
(530)
Mouse (Mus musculus) [TaxId: 10090]
(166)
1a
d3ftgb_
B:
Protein domain
:
Class I MHC, alpha-3 domain
(293)
Mouse (Mus musculus) [TaxId: 10090]
(102)
2a
d3ftga2
A:182-275
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
MHC antigen-recognition domain
(585)
Superfamily
:
MHC antigen-recognition domain
(585)
Family
:
MHC antigen-recognition domain
(533)
Protein domain
:
Class I MHC, alpha-1 and alpha-2 domains
(294)
Mouse (Mus musculus), H-2DB [TaxId: 10090]
(25)
3a
d3ftga1
A:1-181
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CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_3ftgA01 (A:1-181)
2a: CATH_3ftgB00 (B:0-99)
2b: CATH_3ftgA02 (A:182-272)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1
(402)
Homologous Superfamily
:
Murine Class I Major Histocompatibility Complex, H2-DB, subunit A, domain 1
(400)
Mouse (Mus musculus)
(40)
1a
3ftgA01
A:1-181
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Mouse (Mus musculus)
(152)
2a
3ftgB00
B:0-99
2b
3ftgA02
A:182-272
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Pfam Domains
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Asymmetric Unit 1
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