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3FSX
Biol. Unit 2
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Asym.Unit (239 KB)
Biol.Unit 1 (142 KB)
Biol.Unit 2 (145 KB)
Biol.Unit 3 (131 KB)
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(1)
Title
:
STRUCTURE OF TETRAHYDRODIPICOLINATE N-SUCCINYLTRANSFERASE (RV1201C; DAPD) FROM MYCOBACTERIUM TUBERCULOSIS
Authors
:
L. Schuldt, S. Weyand, G. Kefala, M. S. Weiss
Date
:
12 Jan 09 (Deposition) - 23 Jun 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D (3x)
Biol. Unit 3: E (3x)
Keywords
:
Beta Helix, L Beta H Domain, Acyltransferase, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
L. Schuldt, S. Weyand, G. Kefala, M. S. Weiss
The Three-Dimensional Structure Of A Mycobacterial Dapd Provides Insights Into Dapd Diversity And Reveals Unexpecte Particulars About The Enzymatic Mechanism.
J. Mol. Biol. V. 389 863 2009
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
1b: ACETIC ACID (ACYb)
1c: ACETIC ACID (ACYc)
1d: ACETIC ACID (ACYd)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
2f: MAGNESIUM ION (MGf)
2g: MAGNESIUM ION (MGg)
2h: MAGNESIUM ION (MGh)
2i: MAGNESIUM ION (MGi)
3a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
3b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
3c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
4c: SODIUM ION (NAc)
4d: SODIUM ION (NAd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
ACY
3
Ligand/Ion
ACETIC ACID
2
MG
-1
Ligand/Ion
MAGNESIUM ION
3
MPD
3
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
4
NA
-1
Ligand/Ion
SODIUM ION
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Sites
(7, 7)
Info
All Sites
1: AC6 (SOFTWARE)
2: AC7 (SOFTWARE)
3: BC1 (SOFTWARE)
4: BC2 (SOFTWARE)
5: BC5 (SOFTWARE)
6: BC6 (SOFTWARE)
7: BC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC6
SOFTWARE
ARG D:201 , SER D:203 , GLY D:216 , SER D:219 , ILE D:220 , GLY D:222 , ALA D:242
BINDING SITE FOR RESIDUE ACY D 331
2
AC7
SOFTWARE
HIS D:94 , ARG D:95 , VAL D:156 , PRO D:157 , THR D:158
BINDING SITE FOR RESIDUE MPD D 340
3
BC1
SOFTWARE
ASP D:166 , NA D:334 , HOH D:401
BINDING SITE FOR RESIDUE MG D 332
4
BC2
SOFTWARE
GLU D:183
BINDING SITE FOR RESIDUE MG D 333
5
BC5
SOFTWARE
HOH A:512 , HOH A:519 , HOH D:541
BINDING SITE FOR RESIDUE MG A 333
6
BC6
SOFTWARE
HOH D:511 , SER E:295
BINDING SITE FOR RESIDUE MG E 333
7
BC9
SOFTWARE
ASP D:164 , ASP D:166 , MG D:332
BINDING SITE FOR RESIDUE NA D 334
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
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CATH Domains
(2, 10)
Info
all CATH domains
1a: CATH_3fsxA02 (A:111-150)
1b: CATH_3fsxB02 (B:111-150)
1c: CATH_3fsxC02 (C:111-150)
1d: CATH_3fsxD02 (D:111-150)
1e: CATH_3fsxE02 (E:111-150)
2a: CATH_3fsxD03 (D:151-310)
2b: CATH_3fsxB03 (B:151-309)
2c: CATH_3fsxA03 (A:151-310)
2d: CATH_3fsxC03 (C:151-303)
2e: CATH_3fsxE03 (E:151-303)
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Classes
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)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Wheat Germ Agglutinin (Isolectin 2); domain 1
(140)
Homologous Superfamily
:
Trimeric LpxA-like enzymes
(3)
Mycobacterium tuberculosis. Organism_taxid: 83332. Strain: h37rv.
(2)
1a
3fsxA02
A:111-150
1b
3fsxB02
B:111-150
1c
3fsxC02
C:111-150
1d
3fsxD02
D:111-150
1e
3fsxE02
E:111-150
Class
:
Mainly Beta
(13760)
Architecture
:
3 Solenoid
(196)
Topology
:
UDP N-Acetylglucosamine Acyltransferase; domain 1
(90)
Homologous Superfamily
:
Hexapeptide repeat proteins
(85)
Mycobacterium tuberculosis. Organism_taxid: 83332. Strain: h37rv.
(2)
2a
3fsxD03
D:151-310
2b
3fsxB03
B:151-309
2c
3fsxA03
A:151-310
2d
3fsxC03
C:151-303
2e
3fsxE03
E:151-303
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Pfam Domains
(0, 0)
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Asym.Unit (239 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
Biol.Unit 2 (145 KB)
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Biol.Unit 3 (131 KB)
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