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3FSG
Biol. Unit 1
Info
Asym.Unit (204 KB)
Biol.Unit 1 (139 KB)
Biol.Unit 2 (141 KB)
Biol.Unit 3 (139 KB)
Biol.Unit 4 (185 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ALPHA/BETA SUPERFAMILY HYDROLASE FROM OENOCOCCUS OENI PSU-1
Authors
:
B. Nocek, L. Bigelow, G. Cobb, A. Joachimiak, Midwest Center For Str Genomics (Mcsg)
Date
:
09 Jan 09 (Deposition) - 27 Jan 09 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C,D (1x)
Biol. Unit 2: A,B,C (1x)
Biol. Unit 3: A,C,D (1x)
Biol. Unit 4: A,B,C,D (1x)
Keywords
:
Alpha/Beta Superfamily Hydrolase, Pf00561, Mcsg, Psi, Psi-2, Structural Genomics, Protein Structure Initiative, Midwest Center For Structural Genomics, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Nocek, L. Bigelow, G. Cobb, A. Joachimiak
Crystal Structure Of Alpha/Beta Superfamily Hydrolase From Oenococcus Oeni Psu-1
To Be Published
[
close entry info
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Hetero Components
(5, 30)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: S-HYDROXYCYSTEINE (CSOa)
2b: S-HYDROXYCYSTEINE (CSOb)
2c: S-HYDROXYCYSTEINE (CSOc)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
5a: SELENOMETHIONINE (MSEa)
5b: SELENOMETHIONINE (MSEb)
5c: SELENOMETHIONINE (MSEc)
5d: SELENOMETHIONINE (MSEd)
5e: SELENOMETHIONINE (MSEe)
5f: SELENOMETHIONINE (MSEf)
5g: SELENOMETHIONINE (MSEg)
5h: SELENOMETHIONINE (MSEh)
5i: SELENOMETHIONINE (MSEi)
5j: SELENOMETHIONINE (MSEj)
5k: SELENOMETHIONINE (MSEk)
5l: SELENOMETHIONINE (MSEl)
5m: SELENOMETHIONINE (MSEm)
5n: SELENOMETHIONINE (MSEn)
5o: SELENOMETHIONINE (MSEo)
5p: SELENOMETHIONINE (MSEp)
5q: SELENOMETHIONINE (MSEq)
5r: SELENOMETHIONINE (MSEr)
5s: SELENOMETHIONINE (MSEs)
6a: SULFATE ION (SO4a)
6b: SULFATE ION (SO4b)
6c: SULFATE ION (SO4c)
6d: SULFATE ION (SO4d)
6e: SULFATE ION (SO4e)
6f: SULFATE ION (SO4f)
6g: SULFATE ION (SO4g)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
CSO
2
Mod. Amino Acid
S-HYDROXYCYSTEINE
3
EDO
6
Ligand/Ion
1,2-ETHANEDIOL
4
GOL
2
Ligand/Ion
GLYCEROL
5
MSE
14
Mod. Amino Acid
SELENOMETHIONINE
6
SO4
6
Ligand/Ion
SULFATE ION
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC8 (SOFTWARE)
08: AC9 (SOFTWARE)
09: BC1 (SOFTWARE)
10: BC2 (SOFTWARE)
11: BC3 (SOFTWARE)
12: BC4 (SOFTWARE)
13: BC5 (SOFTWARE)
14: BC6 (SOFTWARE)
15: BC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:140 , ILE A:141 , PHE A:150 , EDO B:1002
BINDING SITE FOR RESIDUE EDO A1001
02
AC2
SOFTWARE
ASP A:180 , LYS A:181 , THR A:182 , HOH A:484
BINDING SITE FOR RESIDUE EDO A1003
03
AC3
SOFTWARE
ASP A:124 , GLN A:188 , ASN A:189 , ASN A:190 , TYR A:191 , SER A:192 , HOH A:517
BINDING SITE FOR RESIDUE GOL A3002
04
AC4
SOFTWARE
ARG A:86 , ARG A:87 , HOH A:350 , ASN B:9
BINDING SITE FOR RESIDUE SO4 A 401
05
AC5
SOFTWARE
LEU A:27 , SER A:94 , VAL A:120 , HIS A:125 , ARG A:128 , GLN A:188 , TYR A:191 , VAL A:218 , HOH A:372 , HOH A:392
BINDING SITE FOR RESIDUE SO4 A 406
06
AC6
SOFTWARE
EDO A:1001 , ASP B:140 , ILE B:141
BINDING SITE FOR RESIDUE EDO B1002
07
AC8
SOFTWARE
TYR C:191 , SER C:192
BINDING SITE FOR RESIDUE EDO C2001
08
AC9
SOFTWARE
LEU C:27 , VAL C:120 , HIS C:125 , ARG C:128 , GLN C:188 , TYR C:191 , VAL C:218 , HOH C:363
BINDING SITE FOR RESIDUE SO4 C 404
09
BC1
SOFTWARE
ILE C:15 , GLY C:16 , GLY C:45 , ARG C:49
BINDING SITE FOR RESIDUE SO4 C 405
10
BC2
SOFTWARE
ASN C:59 , LYS C:178
BINDING SITE FOR RESIDUE SO4 C 407
11
BC3
SOFTWARE
ASP D:124 , GLN D:188 , ASN D:189 , ASN D:190 , TYR D:191 , SER D:192
BINDING SITE FOR RESIDUE GOL D3002
12
BC4
SOFTWARE
LEU C:154 , LEU D:137 , GLU D:139 , ASP D:140 , ILE D:141 , EDO D:1002
BINDING SITE FOR RESIDUE EDO D1001
13
BC5
SOFTWARE
ASP C:140 , ILE C:141 , EDO D:1001
BINDING SITE FOR RESIDUE EDO D1002
14
BC6
SOFTWARE
ALA D:102 , HIS D:106 , PHE D:195 , LEU D:199
BINDING SITE FOR RESIDUE EDO D1003
15
BC7
SOFTWARE
LEU D:27 , SER D:94 , VAL D:120 , HIS D:125 , ARG D:128 , TYR D:191 , VAL D:218 , HOH D:452
BINDING SITE FOR RESIDUE SO4 D 403
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_3fsgA00 (A:2-267)
1b: CATH_3fsgB00 (B:2-266)
1c: CATH_3fsgC00 (C:2-266)
1d: CATH_3fsgD00 (D:3-266)
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(
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1820, no name defined]
(692)
Oenococcus oeni psu-1. Organism_taxid: 203123. Strain: psu-1.
(1)
1a
3fsgA00
A:2-267
1b
3fsgB00
B:2-266
1c
3fsgC00
C:2-266
1d
3fsgD00
D:3-266
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Atom Selection
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Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain C
Chain D
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (204 KB)
Header - Asym.Unit
Biol.Unit 1 (139 KB)
Header - Biol.Unit 1
Biol.Unit 2 (141 KB)
Header - Biol.Unit 2
Biol.Unit 3 (139 KB)
Header - Biol.Unit 3
Biol.Unit 4 (185 KB)
Header - Biol.Unit 4
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