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3FRX
Asym. Unit
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Asym.Unit (229 KB)
Biol.Unit 1 (59 KB)
Biol.Unit 2 (60 KB)
Biol.Unit 3 (58 KB)
Biol.Unit 4 (59 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE YEAST ORTHOLOGUE OF RACK1, ASC1.
Authors
:
S. M. Coyle, W. V. Gilbert, J. A. Doudna
Date
:
08 Jan 09 (Deposition) - 17 Feb 09 (Release) - 10 Mar 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.13
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Rack1, Wd40, Beta Propeller, Ribosome, Translation, Acetylation, Cytoplasm, Phosphoprotein, Wd Repeat, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. M. Coyle, W. V. Gilbert, J. A. Doudna
Direct Link Between Rack1 Function And Localization At The Ribosome In Vivo
Mol. Cell. Biol. V. 29 1626 2009
(for further references see the
PDB file header
)
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Hetero Components
(2, 29)
Info
All Hetero Components
1a: MANGANESE (II) ION (MNa)
1b: MANGANESE (II) ION (MNb)
1c: MANGANESE (II) ION (MNc)
1d: MANGANESE (II) ION (MNd)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
2t: SELENOMETHIONINE (MSEt)
2u: SELENOMETHIONINE (MSEu)
2v: SELENOMETHIONINE (MSEv)
2w: SELENOMETHIONINE (MSEw)
2x: SELENOMETHIONINE (MSEx)
2y: SELENOMETHIONINE (MSEy)
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No.
Name
Count
Type
Full Name
1
MN
4
Ligand/Ion
MANGANESE (II) ION
2
MSE
25
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:114 , HOH A:345 , HOH A:353 , HOH A:515 , HOH A:527 , HOH A:794
BINDING SITE FOR RESIDUE MN A1138
2
AC2
SOFTWARE
ASP B:114 , HOH B:407 , HOH B:420 , HOH B:610 , HOH B:749 , HOH B:1422
BINDING SITE FOR RESIDUE MN B1139
3
AC3
SOFTWARE
ASP C:114 , HOH C:327 , HOH C:341 , HOH C:375 , HOH C:377 , HOH C:412
BINDING SITE FOR RESIDUE MN C1140
4
AC4
SOFTWARE
ASP D:114 , HOH D:337 , HOH D:379 , HOH D:636
BINDING SITE FOR RESIDUE MN D1141
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 12)
Info
All PROSITE Patterns/Profiles
1: WD_REPEATS_1 (A:80-94,B:80-94,C:80-94,D:80-94|A:...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
WD_REPEATS_1
PS00678
Trp-Asp (WD) repeats signature.
GBLP_YEAST
80-94
169-183
211-225
12
A:80-94
B:80-94
C:80-94
D:80-94
A:169-183
B:169-183
C:169-183
D:169-183
A:211-225
B:211-225
C:211-225
D:211-225
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Exons
(2, 8)
Info
All Exons
Exon 1.1 (A:4-179 (gaps) | B:1-179 (gaps) | ...)
Exon 1.2 (A:180-318 | B:180-319 | C:180-318 ...)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YMR116C
1
YMR116C.1
XIII:500687-500151
537
GBLP_YEAST
1-179
179
4
A:4-179 (gaps)
B:1-179 (gaps)
C:5-179 (gaps)
D:2-179 (gaps)
176
179
175
178
1.2
YMR116C
2
YMR116C.2
XIII:499877-499455
423
GBLP_YEAST
180-319
140
4
A:180-318
B:180-319
C:180-318
D:180-319
139
140
139
140
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SCOP Domains
(0, 0)
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (229 KB)
Header - Asym.Unit
Biol.Unit 1 (59 KB)
Header - Biol.Unit 1
Biol.Unit 2 (60 KB)
Header - Biol.Unit 2
Biol.Unit 3 (58 KB)
Header - Biol.Unit 3
Biol.Unit 4 (59 KB)
Header - Biol.Unit 4
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